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SCNpilot_expt_1000_bf_scaffold_22756_1

Organism: SCNPILOT_EXPT_300_BF_Burkholderiales_66_26

near complete RP 52 / 55 BSCG 51 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: 1169..2521

Top 3 Functional Annotations

Value Algorithm Source
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 88.0
  • Coverage: 450.0
  • Bit_score: 805
  • Evalue 6.20e-231
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.0
  • Coverage: 450.0
  • Bit_score: 805
  • Evalue 2.80e-230
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidovorax sp. (strain JS42) RepID=RPOB_ACISJ similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 450.0
  • Bit_score: 805
  • Evalue 2.00e-230

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Taxonomy

Acidovorax sp. JS42 → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1353
GTGAAGGACACGTCGCTGCGCGTCGAGCAGGGCTCGCAGGGCACGGTGATCGACGTGCAGGTGTTCACCCGCGAGGGTATCCAGCGCGACAAGCGCGCGCAGCAGATCATCGACGACGAGCTCAAGCGCTACCGCCTGGACTTGAACGACCGTCTGCGCATCGTCGAGGCCGACGCGTTCGACCGCATCGAGAAGCTGCTGGTGGGCAAGGTGGCCAACGGCGGGCCGAACAAGCTCGCCAAGGGCAGCAAGATCGACAAGGCCTATCTCGCCAGCGTCGAGCGCTTTCACTGGTTCGACATCCGCCTGGCCGACGATACGGTGGCCGCGCAGCTCGAATCGATGAAGAACGCGATGGAGCACACGCGCCACGAGTTCGACCTCGCCTTCGAGGAAAAGAGGAAGAAGCTCACGCAGGGCGACGAGCTGCCCGCGGGCGTGCTCAAGATGGTCAAGGTGTACCTCGCCGTCAAGCGCCGCCTGCAGCCCGGCGACAAGATGGCCGGGCGCCACGGCAACAAGGGCGTGGTCTCCAAGATCGTGCCGGTCGAGGACATGCCCTACATGGAAGACGGTACGCCGGCCGACATCGTGCTCAATCCGCTGGGCGTGCCCTCGCGGATGAACATCGGGCAGGTGCTGGAGGTGCACCTGGGCTGGGCCGCCAAGGGCCTGGGCCAGCGCATCGCCGACATGATCGAGCGCGAGGCCAAGGCGGCCGAGGTGCGCAAGTACATCGAGCACATCTACAACGCGCGCGGCCGCAAGGAAGACCTGGCGCAGCTCGACGACGCCGCGCTCATGGCGATGGCGCAGGAGCTCAAGAAGGGCGTGCCCTTTGCGTCTCCGGTGTTCGACGGCGCTTCGGAAGAAGAGATCAAGGAGATGCTGCAGCTGGCCTACCCGGAAGAGGTGGCCAAGGCCAAGGGCCTCACGGCCCCGCGCACGCAGGCCTGGCTGTACGACGGGCGTACCGGCGAGCGCTTCGAGCGTCCGACGACGATCGGCTACATGCACTACCTGAAGCTGCACCACCTGGTCGACGACAAGATGCACGCGCGCTCCACCGGCCCTTACTCGCTGGTGACACAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGTTTCGGCGAGATGGAAGTGTGGGCGCTGGAAGCTTACGGCGCCGCCTACGTGCTGCAGGAAATGCTCACCGTCAAGTCCGACGACGTGCAGGGCCGCACCAAGGTGTACGAGAGCATCGTCAAGGGCGAGCACTCGATCGAAGCGGGCATGCCCGAGTCGTTCAACGTGCTGATCAAGGAAATCCGCTCGCTGGGGCTGGACATCGAGATGGACCGCTCCTGA
PROTEIN sequence
Length: 451
VKDTSLRVEQGSQGTVIDVQVFTREGIQRDKRAQQIIDDELKRYRLDLNDRLRIVEADAFDRIEKLLVGKVANGGPNKLAKGSKIDKAYLASVERFHWFDIRLADDTVAAQLESMKNAMEHTRHEFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMEDGTPADIVLNPLGVPSRMNIGQVLEVHLGWAAKGLGQRIADMIEREAKAAEVRKYIEHIYNARGRKEDLAQLDDAALMAMAQELKKGVPFASPVFDGASEEEIKEMLQLAYPEEVAKAKGLTAPRTQAWLYDGRTGERFERPTTIGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLIKEIRSLGLDIEMDRS*