ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1092_12

Organism: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 11 / 38 MC: 2
Location: comp(7871..8677)

Top 3 Functional Annotations

Value Algorithm Source
lipopolysaccharide biosynthesis protein n=1 Tax=Rhizobium meliloti RepID=UPI0003661364 similarity UNIREF
DB: UNIREF100
  • Identity: 52.9
  • Coverage: 257.0
  • Bit_score: 278
  • Evalue 6.50e-72
family 2 glycosyl transferase similarity KEGG
DB: KEGG
  • Identity: 52.9
  • Coverage: 257.0
  • Bit_score: 278
  • Evalue 2.70e-72
LpsC {ECO:0000313|EMBL:AEH79259.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.9
  • Coverage: 257.0
  • Bit_score: 278
  • Evalue 1.20e-71

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sinorhizobium meliloti → Sinorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 807
ATGCCAACCACCAGCACATTGCCCATATCTGCCTTCATCATCAGCAAGAATGAAATGGACATGATCGGACCGTGCATCGAAAGCCTCAATGCATGCAAAGAGATCATAATTGTCGATTCCGGTTCGACGGATGGCACGATTGAGCGGATCCGAGAATACAAGGACAAAGGCTATCCTATCCGACTGCTCCAGCGCGAATGGCCCGGATACGCAGCACAGAAACAATTCGCGCTGGATCAATGCTCCGAAATTTGGTGCTTGAACCTCGACTGCGATGAACGTCTCGACCCCTTGTTGCAGCAAGAACTAGCCACGCTAACATCACGATCGCAAAACTGTGCAGCGTGGCGACTGGGTTTCAGCCTGTTCCTCTACGGCTATGGTTATACACCTGACCGGGTGCGCTTCGGCACGGCTATTCGTTTGATGCGACGGGACCGGACCCGCTACGGACTTGGCGAACTCGTGCACGAAGGTGTTGAGGTGGACGGCGAGATCGGCACCGTTAATAAAGGAAAAATACTTCATGCCAGAGTGGTTAGCTTGGGAGAACAAATATTAAAAGAAAATCACTATTCCACCTTAAAGGCAGAGCAATTATTCAAGTTAGGGAAAAGGCCACGTTTACTGCGATTAATTTTCAACCCTATCATATATTTTCAAAGACTATATATTTTTCGCCGTTTCTTTTTATGTGGCTGGGCTGGATTCATCTACGCTTGGACAGGCGCGATATATTCATTTATGACCGAAGCGAAACTGTATCAATTACACGCAAGGATGCGACGTGACCCTTCACAATCCTGA
PROTEIN sequence
Length: 269
MPTTSTLPISAFIISKNEMDMIGPCIESLNACKEIIIVDSGSTDGTIERIREYKDKGYPIRLLQREWPGYAAQKQFALDQCSEIWCLNLDCDERLDPLLQQELATLTSRSQNCAAWRLGFSLFLYGYGYTPDRVRFGTAIRLMRRDRTRYGLGELVHEGVEVDGEIGTVNKGKILHARVVSLGEQILKENHYSTLKAEQLFKLGKRPRLLRLIFNPIIYFQRLYIFRRFFLCGWAGFIYAWTGAIYSFMTEAKLYQLHARMRRDPSQS*