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SCNpilot_expt_1000_bf_scaffold_1423_21

Organism: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 11 / 38 MC: 2
Location: comp(20466..20711)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Hoeflea sp. 108 RepID=UPI00035D1CA6 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 164
  • Evalue 5.40e-38
RNA chaperone Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 98.8
  • Coverage: 81.0
  • Bit_score: 161
  • Evalue 8.50e-38
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.8
  • Coverage: 81.0
  • Bit_score: 161
  • Evalue 3.80e-37

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Taxonomy

Mesorhizobium amorphae → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 246
ATGGCGGAACGTTCGCAAAATCTTCAGGACCTGTTCCTGAATTCTGTTCGCAAGAGCAAAAACCCACTTACCATTTTCCTGATAAACGGCGTGAAGCTGACCGGTGTGGTGACCTCGTTCGACAATTTCTGCGTCCTTCTGCGGCGCGACGGTCACTCCCAGCTTGTCTACAAGCACGCCATTTCCACGATCATGCCGAGCCAGCCGGTTCAGATGTTCGATGGCGAGGAAAGCCAGGGCGGCTGA
PROTEIN sequence
Length: 82
MAERSQNLQDLFLNSVRKSKNPLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPSQPVQMFDGEESQGG*