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SCNpilot_expt_1000_bf_scaffold_2084_18

Organism: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 11 / 38 MC: 2
Location: comp(17252..17536)

Top 3 Functional Annotations

Value Algorithm Source
PREDICTED: DNA-binding protein HU homolog n=1 Tax=Pantholops hodgsonii RepID=UPI0003C198A1 similarity UNIREF
DB: UNIREF100
  • Identity: 97.9
  • Coverage: 94.0
  • Bit_score: 188
  • Evalue 4.10e-45
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.9
  • Coverage: 94.0
  • Bit_score: 187
  • Evalue 7.50e-45
integration host factor subunit beta; K05788 integration host factor subunit beta similarity KEGG
DB: KEGG
  • Identity: 96.8
  • Coverage: 94.0
  • Bit_score: 186
  • Evalue 4.90e-45

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Taxonomy

Mesorhizobium sp. LNJC394B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 285
ATGATCAAGTCTGAACTCGTGCAAATTATCGCCACGCGCAATCCGCATCTTTTCCTGCGCGATGTCGAAAATATCGTCGGCGCGGTGTTCGATGAGATCACTGATGCGCTCGCCGAGGGCAACCGCGTGGAACTGCGCGGCTTCGGCGCCTTTTCGGTCAAGAACCGCCCTGCCCGCACGGGACGCAACCCGCGCACCGGCGAATCCGTCGACGTCGAGGAAAAGTGGGTGCCGTTCTTCAAGACCGGCAAGGAGTTGCGCGAGCGACTGAACGGCGACAAATAG
PROTEIN sequence
Length: 95
MIKSELVQIIATRNPHLFLRDVENIVGAVFDEITDALAEGNRVELRGFGAFSVKNRPARTGRNPRTGESVDVEEKWVPFFKTGKELRERLNGDK*