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SCNpilot_expt_1000_bf_scaffold_3183_15

Organism: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 11 / 38 MC: 2
Location: comp(12648..13658)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.9
  • Coverage: 336.0
  • Bit_score: 649
  • Evalue 1.90e-183
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 97.6
  • Coverage: 336.0
  • Bit_score: 648
  • Evalue 1.20e-183
  • rbh
DNA-directed RNA polymerase subunit alpha n=4 Tax=Mesorhizobium RepID=V7G205_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.6
  • Coverage: 336.0
  • Bit_score: 648
  • Evalue 3.00e-183
  • rbh

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Taxonomy

Mesorhizobium loti → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1011
ATGATCCAGAAAAACTGGCAGGAACTGATCAAGCCGAACAAGGTCGAGTTCTCGTCGAAGAAAAAGACTTTGACCACTCTGGTCGCCGAGCCACTCGAGCGTGGCTTTGGCCTCACCCTCGGTAACGCGCTGCGTCGCGTGCTTTTGTCGTCGCTGCGTGGCGCTGCCGTAACGGCCGTCCAGATCGACGGCGTTTTGCATGAGTTCTCCTCGATTGGCGGTGTCCGCGAGGACGTGACCGACATCGTGCTCAACATCAAGGAAATCGCCATCAAGATGGAAGGCGATGGCCCCAAGCGCATGGTTGTGCGCAAGCAGGGTCCAGGCGCCGTTCTCGCCGGCGACATCCAGACGGTTGGCGACGTCGAGATCCTCAATCCCGAGCACGTCATCTGCACGCTGGACGAAGGCGCTGAAATCCGCATGGAATTCACCGTCGACACAGGCAAGGGCTACGTGCCGGCAGAGCGCAACCGCGCCGAAGACGCGCCGATCGGGCTCATCCCGGTCGACAGCCTCTACTCGCCGGTCAAGAAGGTCTCCTACAAGGTCGAGAACACCCGCGAGGGCCAGGTTCTCGACTACGACAAGCTGACAATGACCATCGAGACCGACGGTTCCGTCACCGGCGAGGACGCAGTGGCATTCGCCGCCCGCATCCTGCAGGACCAGCTGGCGCTGTTCGTCAACTTCGACGAGCCGCAGAAGGAAGTCGCGACCGAGGCGGTCACCGAGCTTGCCTTCAACCCGGCCCTGCTCAAGAAGGTCGACGAACTGGAGCTTTCCGTCCGTTCGGCCAACTGCCTGAAGAACGACAACATCGTCTACATTGGCGACCTGATCCAGAAGACCGAAGCCGAGATGCTGCGCACCCCGAACTTCGGCCGCAAGTCGCTCAACGAGATCAAGGAAGTGCTGGCGGCCATGGGCTTGCACCTCGGCATGGAAGTGCCGGATTGGCCGCCGGAAAACATCGAAGACCTCGCGAAACGTTACGAAGACCAGTATTGA
PROTEIN sequence
Length: 337
MIQKNWQELIKPNKVEFSSKKKTLTTLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTAVQIDGVLHEFSSIGGVREDVTDIVLNIKEIAIKMEGDGPKRMVVRKQGPGAVLAGDIQTVGDVEILNPEHVICTLDEGAEIRMEFTVDTGKGYVPAERNRAEDAPIGLIPVDSLYSPVKKVSYKVENTREGQVLDYDKLTMTIETDGSVTGEDAVAFAARILQDQLALFVNFDEPQKEVATEAVTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLAAMGLHLGMEVPDWPPENIEDLAKRYEDQY*