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SCNpilot_expt_1000_bf_scaffold_2614_26

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7

near complete RP 46 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(19738..20019)

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretory pathway TrbD component n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z2J9_SPHJU similarity UNIREF
DB: UNIREF100
  • Identity: 88.2
  • Coverage: 93.0
  • Bit_score: 174
  • Evalue 6.00e-41
trbD; type IV secretory pathway TrbD component; K03198 type IV secretion system protein VirB3 similarity KEGG
DB: KEGG
  • Identity: 88.2
  • Coverage: 93.0
  • Bit_score: 174
  • Evalue 1.90e-41
Type IV secretory pathway TrbD component {ECO:0000313|EMBL:BAI96831.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.2
  • Coverage: 93.0
  • Bit_score: 174
  • Evalue 8.50e-41

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Taxonomy

Sphingobium japonicum → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 282
ATGGCGGGCGTCGTCGATCAGGGTAGCGAGGTTCCTGCCTTCATGGTTCCCGTCCACCGGGCGCTGACCGAGCCGATCCTGCTCGGCGGCGCTCCCCGCGCCATTGCGATCATGAACGGCACGCTGGCCGGCGCGGTCGGGCTCGGCCTGCGCCTCTGGCTGGTCGGCCTCGCCATCTGGGCGATCGGACATTTCGCGGCCGTGTGGGCCGCCAAGCGCGATCCCCTCTTCGTCGATGTCGGCCGCCGTCATCTGCGCATCCCAACGCATCTCACGGTCTGA
PROTEIN sequence
Length: 94
MAGVVDQGSEVPAFMVPVHRALTEPILLGGAPRAIAIMNGTLAGAVGLGLRLWLVGLAIWAIGHFAAVWAAKRDPLFVDVGRRHLRIPTHLTV*