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SCNpilot_expt_1000_bf_scaffold_2614_27

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7

near complete RP 46 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(20019..20351)

Top 3 Functional Annotations

Value Algorithm Source
Conjugal transfer protein TrbC n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HJQ5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 90.9
  • Coverage: 110.0
  • Bit_score: 188
  • Evalue 3.60e-45
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EQA99584.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.9
  • Coverage: 110.0
  • Bit_score: 188
  • Evalue 5.10e-45
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2 similarity KEGG
DB: KEGG
  • Identity: 87.3
  • Coverage: 110.0
  • Bit_score: 186
  • Evalue 5.70e-45

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Taxonomy

Sphingobium quisquiliarum → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 333
GTGATCCAAGCCTCACGTTCAATGCGCCATCGCCTCGCCATGGTGCTGTCCGTCACCACGCTCAGCGTCGTGATGGCCGTGCCCGCCCACGCCTCTGGCTCATCCATGCCGTGGGAAGCGCCGCTGCAATCCATCCTCCAGTCGATCGAAGGACCGGTCGCCAAGATCATCGCTGTGATCGTCATCATCTCGACCGGCCTGGCGCTGGCCTTCGGCGACACCTCCGGCGGCTTCCGCCGCCTGATCCAGATCGTCTTCGGCCTGTCGATCGCCTTTGCCGCCAGCTCGTTCTTCCTCAGCTTCTTCAGCTTCGGCGGCGGAGCGCTGGTCTGA
PROTEIN sequence
Length: 111
VIQASRSMRHRLAMVLSVTTLSVVMAVPAHASGSSMPWEAPLQSILQSIEGPVAKIIAVIVIISTGLALAFGDTSGGFRRLIQIVFGLSIAFAASSFFLSFFSFGGGALV*