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SCNpilot_expt_1000_bf_scaffold_6243_7

Organism: SCNPILOT_CONT_300_BF_Xanthomonadales_66_150

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: comp(6123..7850)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Dyella ginsengisoli RepID=UPI00034D49BB similarity UNIREF
DB: UNIREF100
  • Identity: 76.5
  • Coverage: 565.0
  • Bit_score: 848
  • Evalue 4.40e-243
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.3
  • Coverage: 568.0
  • Bit_score: 902
  • Evalue 2.80e-259
RNA polymerase, sigma 70 subunit, RpoD similarity KEGG
DB: KEGG
  • Identity: 76.9
  • Coverage: 567.0
  • Bit_score: 830
  • Evalue 3.90e-238

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Taxonomy

Mizugakiibacter sediminis → Mizugakiibacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1728
ATGGAAAACCTCCCTTCGCAGCAATCCGAAATCAAGCAGCTGATCACCAAAGGCCGTGAGCAGGGCTACCTGACTTACGCCGAGGTCAACGATCACCTGCCGGACGACATCGTCGATCCGGAGCAGATCGAAGACATCATCGGGATGATCAACGGCATGGGCATCGAGGTGCACGAGATCGCACCCGATACCGACCTGATCAGCGCCGAAGGCCCGGTCGGCGGCGAAGACGACGAAACCGCGACCGAAGAGGCCGTCGCGCTGCTGTCGGCGGTCGACGCCGAAGTCGGTCGCACCACCGATCCGGTGCGCATGTACATGCGCGAGATGGGTACGGTGGAATTGCTGACCCGCGAGGGCGAAATCGCCATCGCCAAGCGCATCGAGGAAGGCCTGACCCAGGTGCAGACCGCGCTGTCCAGCTTCCCGTGGGCGATCGGTTTGCTGCTGGAAGAATACGACCTGCACCTCGACGGCAAGCGCCGCATGAGCGAGATCCTGGCCGGCTTCGCGGACCTCGAAGTGCCCGCCGAGGAATTCGGCGTGGCGCAACCCGCGGCGGATGCCTCGTCGGACAACGCTGACGAGGATTCTGACGGCGACGACGAGGACGAGGACGATTCCGCCGGCGGCGACGAGGATTCGGGTCCCAGTGGTCCCGATCCGGTCGAGGTCCAGCGCCGCATGGACGTGCTGCGCGAACTGTATGGCAAGTTCCAGAAGACCGCCGACAAGTACGGTGTCGCCGACAAGAAGTCGCAGAAGCTGCGCGAGAAGATGGGCGAGGAGTTCCTCAAGCTCAAGCTCCCGTCCGCGCTGATCGACGGTTTCGTGCGCAAGCTGCGCGACGTGGTGGCGGCGATCCGCCAGCACGAGCGGGTGATCATGGACGTCTGCACCCGCCAGTGCCACATGCCGCGCAAGGAGTTCATCGAGCTGTTCCCGTCCAACGAGACCAATCTCGACTGGACGGCCGAACTCGCGCGCAAGCGCCAGAAGTGGGTGCCCGCGATCAGGAACCACCGCGACGATATCCTGCTGGAACAGCAGAAGCTCACCGAGATCGAGCGCGCGCTGTACCTGCCGCTCACCGACATCAAGGAAATCAACCGCGCGATGTCGATCGGCGAGGCCAAGGCACGGCGCGCCAAGAAGGAAATGGTCGAGGCCAACCTGCGCCTCGTGATTTCGATCGCGAAGAAATACACCAACCGCGGCCTGCAATTCCTGGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCCGTGGACAAGTTCGAATACCGCCGCGGCTACAAGTTCTCGACCTACGCGACGTGGTGGATCCGCCAGGCCATCACGCGTTCGATCGCCGACCAGGCGCGCACCATCCGCATCCCGGTGCACATGATCGAGACCATCAACAAGTTGAACCGCATCAGCCGCCAGATGCTGCAGTTGTACGGCCGCGAACCGACGCCGGAAGAACTGGCCGTGGCGATGGAGATGCCCGAGGACAAGATCCGCAAGGTGTTGAAGATCGCCAAGGAACCGATCTCGATGGAAACCCCGATCGGCGACGACGAGGATTCGCACCTCGGCGATTTCATCGAGGACCAGAACGCGGGTTCCCCCGTGGAATCGGCGACCGATACCGGCCTCACCGAAACCGTGCGCGACGTGCTGGCGGGCCTGACGCCGCGCGAAGCCAAGGTGCTGTGCGCATGCGCTTCGGCATCGACATGA
PROTEIN sequence
Length: 576
MENLPSQQSEIKQLITKGREQGYLTYAEVNDHLPDDIVDPEQIEDIIGMINGMGIEVHEIAPDTDLISAEGPVGGEDDETATEEAVALLSAVDAEVGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLTQVQTALSSFPWAIGLLLEEYDLHLDGKRRMSEILAGFADLEVPAEEFGVAQPAADASSDNADEDSDGDDEDEDDSAGGDEDSGPSGPDPVEVQRRMDVLRELYGKFQKTADKYGVADKKSQKLREKMGEEFLKLKLPSALIDGFVRKLRDVVAAIRQHERVIMDVCTRQCHMPRKEFIELFPSNETNLDWTAELARKRQKWVPAIRNHRDDILLEQQKLTEIERALYLPLTDIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQLYGREPTPEELAVAMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQNAGSPVESATDTGLTETVRDVLAGLTPREAKVLCACASAST*