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SCNpilot_expt_1000_bf_scaffold_18384_3

Organism: SCNPILOT_CONT_300_BF_Xanthomonadales_66_150

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: 3744..3986

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=mine drainage metagenome RepID=T1CYL1_9ZZZZ similarity UNIREF
DB: UNIREF100
  • Identity: 77.6
  • Coverage: 76.0
  • Bit_score: 133
  • Evalue 1.00e-28
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:KJV33210.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.0
  • Coverage: 76.0
  • Bit_score: 133
  • Evalue 1.10e-28
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 73.7
  • Coverage: 76.0
  • Bit_score: 125
  • Evalue 6.70e-27

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Taxonomy

Luteibacter yeojuensis → Luteibacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 243
ATGGGCGATGTGGAAACCGATCGTGCCCTCGTGGAGCGCGTGCGCAAGGGCGACAACCGGGCGTTCGACCTGCTGGTGCGCAAGTACCGGCACAAGATCGTCGGGCTGGTGTCGCGTTACGTGCACGACTGGAGCGAGTGCGAGGACGTGGCGCAGGAAGCCTTCATCCGCGCCTATCGCGCGATCGGCGCGTTCCGTGGAGACAGCGCGTTTTACACCTGGATGTATACAAGATCGCCGTGA
PROTEIN sequence
Length: 81
MGDVETDRALVERVRKGDNRAFDLLVRKYRHKIVGLVSRYVHDWSECEDVAQEAFIRAYRAIGAFRGDSAFYTWMYTRSP*