ggKbase home page

SCNpilot_expt_1000_bf_scaffold_5834_3

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial

near complete RP 43 / 55 MC: 2 BSCG 43 / 51 MC: 2 ASCG 9 / 38
Location: comp(1613..2902)

Top 3 Functional Annotations

Value Algorithm Source
Putative ABC O-antigen/lipopolysaccharide exporter, ATPase subunit n=1 Tax=Rhizobium sp. RepID=L0NBP2_RHISP similarity UNIREF
DB: UNIREF100
  • Identity: 54.5
  • Coverage: 431.0
  • Bit_score: 443
  • Evalue 2.40e-121
  • rbh
Putative ABC O-antigen/lipopolysaccharide exporter, ATPase subunit {ECO:0000313|EMBL:CCF18299.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.5
  • Coverage: 431.0
  • Bit_score: 443
  • Evalue 3.40e-121
Polysaccharide ABC transporter, ATP-binding component; K09691 lipopolysaccharide transport system ATP-binding protein similarity KEGG
DB: KEGG
  • Identity: 42.4
  • Coverage: 450.0
  • Bit_score: 309
  • Evalue 2.30e-81

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium sp. → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1290
ATGTCGTCTGAGCCCTTCATCAAGGCGCGCGGCATCGGCAAGAAATACGCGCTCTATGGCAGCCCGCTGCAAAGGCTGGGCGACCTCGTGCTCGGCACCGGCAGCGCCGGCGAGCACTGGGCCGTGCGCGGCGTCGACCTCGAGCTCGGCCCCGGCGACTGCGTCGGCATCGTCGGCCGGAACGGGGCGGGCAAGTCGACGCTGCTGGAGATGATCTGCGGCATCTCGCGCCCCTCCGAAGGGCGGCTGGAGACGCGCGGCCGCGTGGCCGCCCTGCTCCAGCTCGGCGCCGGCTTCAACCCGGAGTTCACCGGCCGCGAGAACGTCATGCTGGGCGCGGCCATCTACGGCCTGCCGGACGCCGAGATCGCCGCGCGCCTTCCCGACATCCGCGCCTTCGCCGACATCGGCGACTATTTCGAGCGGCCGGTGCGCGAATATTCGAGCGGCATGTATGCCCGCCTCGCCTTCTCCGTCTGCGCCCATGTCGACCCCGACATCCTCGTCGTCGACGAGATCCTCGGCATCGGCGACGTCGCCTTCCAGCAGAAGTCGATGCGCTTCCTGCGCCGCTTCCGCCGCCGCGGCATCACCCTGTTCGTCTCGCACAACGAGCATGCCGTGGCGGCGCTGTGCGAGAGCGCGGTCTGGATGGACCGCGGCCGCGTCGTGGCGCGCGGCGGCACGCGCGAGGTGCTCTACCGCTACCGCCGCGAGCTGCAAAGGCTGGCCATGCAGGACGCGCGCTTCGAGGCGCGCGACGGGGCCGCGGCCGAGATCGCCGAGCTGCCTGTTGCCGCCGCCACGCGCCGGCCGACCGAGTTCGACCTGGACGAGCCGGCGGCGGCGGCCGGGCTCGGCGCCATCGAAGAGGTCGTGGTGAGCGCCGACGGCGTGCCGCTGGCGGCGCTCGAAGGCGGCGAGCGCATCGGCATCGCGGTGACGCTGCGCGCCGACGGCGCGCTGGAGGCGCCCTTCGTGCTGGTGGTGCTGCGCAACCCGATGGGCCAGGCGCTGCTCGCCTGCGACAGCCGCGACGCGGCGCGGCAGCCGGAAAGTCTTGGCGCCGGCGACCGCGCGCGCTTCAGCTTCGCCTTCGACCTGCCCTTCCTGCCGACCGGCAGCTATCCGCTGGAAATCCACGCCTATGCGGGCGCGGGCGAGCCGGCCTGCGTCGAGCGGCGCGAGGCGGCGGCCGTGATGCAGGTCCTGTCGGCCCACATCTCGCACGGCATGGCCAATCTCAGGATGAAGCGGACGCTGCTGGAGGTCGTGCATGAACCCGGCTGA
PROTEIN sequence
Length: 430
MSSEPFIKARGIGKKYALYGSPLQRLGDLVLGTGSAGEHWAVRGVDLELGPGDCVGIVGRNGAGKSTLLEMICGISRPSEGRLETRGRVAALLQLGAGFNPEFTGRENVMLGAAIYGLPDAEIAARLPDIRAFADIGDYFERPVREYSSGMYARLAFSVCAHVDPDILVVDEILGIGDVAFQQKSMRFLRRFRRRGITLFVSHNEHAVAALCESAVWMDRGRVVARGGTREVLYRYRRELQRLAMQDARFEARDGAAAEIAELPVAAATRRPTEFDLDEPAAAAGLGAIEEVVVSADGVPLAALEGGERIGIAVTLRADGALEAPFVLVVLRNPMGQALLACDSRDAARQPESLGAGDRARFSFAFDLPFLPTGSYPLEIHAYAGAGEPACVERREAAAVMQVLSAHISHGMANLRMKRTLLEVVHEPG*