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SCNpilot_expt_1000_bf_scaffold_5834_4

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial

near complete RP 43 / 55 MC: 2 BSCG 43 / 51 MC: 2 ASCG 9 / 38
Location: comp(2892..3716)

Top 3 Functional Annotations

Value Algorithm Source
Putative ABC O-antigen/lipopolysaccharide exporter, innermembrane subunit n=1 Tax=Rhizobium sp. RepID=L0NB38_RHISP similarity UNIREF
DB: UNIREF100
  • Identity: 62.9
  • Coverage: 267.0
  • Bit_score: 352
  • Evalue 2.80e-94
  • rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.9
  • Coverage: 267.0
  • Bit_score: 352
  • Evalue 3.90e-94
hypothetical protein; K09690 lipopolysaccharide transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 41.7
  • Coverage: 259.0
  • Bit_score: 225
  • Evalue 2.70e-56

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Taxonomy

Rhizobium sp. → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 825
ATGGGCGGCGGCATTGGCCTGCAGGCATTCTGGCGGCCGCTCGAAACGCTCCTGCGCAACGGCCAGCTCTACCGGCGCGTGCTGGTGCGCGACATCCAGTCGACCTTCAGGGGCAGCGCGCTGGGGCTGGCCTGGATCGTCGTCATCCCGCTGGTGCTGGTGGCGATCTACACCTTCGTGTTCGGCATGGTGCTGTCCTCGACCTTCTCGATCGGCACGCGCACCCGGATCGAGGTGCCGCTGCTGTTCTTCACCGGGCTCACCGTGTTCGGCTTCTTCATGGAGGTGGTGGGGCGCTCGCCCAACTTCATCCGCGAGAACGCCGTCTACGTGAAGAAGATCGTCTTCCCGCTGGAGATCCTGCCCTGGGTGCTGATCGGCACGGCGCTGTTCAAGTTCGCCATCAACTTCGCGCTGCTGCTCGTCTTCCTCGCCGTCTTCACCGGCGGCGTGCCGGCCGGGGCGCTGATGCTGCCGCTGGTGCTGGTGCCGTTCCTGCTGATGACGGCCGGCCTGTCGTGGCTGCTCGCCGCGGTCGGCACCTATGTGCGCGACCTGCCGCACGCCATCCAGGCGCTGGCGCCGATCATCATGTTCATCAGCCCGATTTTCTATTCCGTCCAGCAGGTGCCGGCGCCCTTCGCCACGCTCTACTACGCCAACCCGCTGACCTTCGTGCTGGAGAGCGTGCGCGGGCTGCTGTTCTTCGACACGGCGCCGTCGGCCGCCGGCCTGCTGGTCTTCGCCGCCGCCTCGCTGCTGGTCTTCGCCGCCGGCTACGCCTTCTTCCAGCGCGCGCGGCCGGGTTTCGCCGATGTCGTCTGA
PROTEIN sequence
Length: 275
MGGGIGLQAFWRPLETLLRNGQLYRRVLVRDIQSTFRGSALGLAWIVVIPLVLVAIYTFVFGMVLSSTFSIGTRTRIEVPLLFFTGLTVFGFFMEVVGRSPNFIRENAVYVKKIVFPLEILPWVLIGTALFKFAINFALLLVFLAVFTGGVPAGALMLPLVLVPFLLMTAGLSWLLAAVGTYVRDLPHAIQALAPIIMFISPIFYSVQQVPAPFATLYYANPLTFVLESVRGLLFFDTAPSAAGLLVFAAASLLVFAAGYAFFQRARPGFADVV*