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SCNpilot_expt_1000_bf_scaffold_19359_1

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

partial RP 30 / 55 MC: 3 BSCG 29 / 51 MC: 2 ASCG 5 / 38
Location: 3..350

Top 3 Functional Annotations

Value Algorithm Source
Putative ECF sigma factor ( rna polymerase sigma factor) n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PKR1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 71.3
  • Coverage: 108.0
  • Bit_score: 151
  • Evalue 6.70e-34
RNA polymerase ECF-type sigma factor SigH {ECO:0000313|EMBL:GAJ94913.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.5
  • Coverage: 114.0
  • Bit_score: 151
  • Evalue 5.50e-34
rpoE1; RNA polymerase sigma factor protein (sigma-24); K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 74.0
  • Coverage: 100.0
  • Bit_score: 150
  • Evalue 2.80e-34

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 348
TTATTTTCGATATTGCATTCGATCTGGATCGACGAGGTGCGGTCCAGGCGCATTCGTTTAGGGGGCGGTATCGTTGATGCCGATTGCGCGCTCATCGTCGATGGTGAATATGAAAGCGAAACGCGCCTGATGGCCAATCAAGTCCTCAAACTCGTCGACGGACTTCCCGAAGCACAGCGGAACGCGGTGTTTCTGGCCTATGTCGAAGGTCTTTCCTACAAGGAAATCGCCGAAGTTCTCGATATTCCGATCGGGACGGTCATGAGCCGGCTCGCAAATGCACGTGCGAGGCTCGCCGATATCATCGCCGCGGTGAAAGAGTCGCCGCTTCGGGGAAGGAGAGATTGA
PROTEIN sequence
Length: 116
LFSILHSIWIDEVRSRRIRLGGGIVDADCALIVDGEYESETRLMANQVLKLVDGLPEAQRNAVFLAYVEGLSYKEIAEVLDIPIGTVMSRLANARARLADIIAAVKESPLRGRRD*