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SCNpilot_expt_1000_bf_scaffold_18927_4

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 4 ASCG 9 / 38 MC: 1
Location: 4260..4766

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:AJP72130.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.0
  • Coverage: 162.0
  • Bit_score: 292
  • Evalue 3.80e-76
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 84.1
  • Coverage: 164.0
  • Bit_score: 272
  • Evalue 9.20e-71
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F40E0D similarity UNIREF
DB: UNIREF100
  • Identity: 92.5
  • Coverage: 161.0
  • Bit_score: 297
  • Evalue 6.50e-78

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Taxonomy

Sphingomonas sp. WHSC-8 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 507
ATGGCAACCAAGGCGATCGAAGGCGGCACGTTCAAGCGCCGCATCCGCAAGGTGTTCGGCGACATCCACGAAGTGGTGCAGATGCCGAACCTGATCGAGGTTCAGCGCGAATCCTACGAACAGTTCCTCCGCAGCGATCCCTCGGTCGGCTATGTCTCCGGTCTCGAGAAGACCCTGCGCTCGGTCTTCCCGATCCGCGACTTCGCCGGCACCGCCGAGCTCGACTTCGTGAACTACGAGCTCGAGAATCCGAAGTTCGACGTGGAAGAGTGCCGTCAGCGCGGCATCACCTATGCGGCGCCGATGCGCGTCACGCTGCGCCTGATCGTGTTCGAGGTGGATCCCGACACGGAAGCCCGTTCGGTGCTCGATATCAAGGAGCAGGACGTCTACATGGGCGACATGCCGCTCATGACCGAGAACGGCACCTTCTTCATCAACGGCACCGAGCGAGCGCGTCATCGTCAGCCAGATGCACCGCTCGCCGGGCGTGCTGTTCGACCATGA
PROTEIN sequence
Length: 169
MATKAIEGGTFKRRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPSVGYVSGLEKTLRSVFPIRDFAGTAELDFVNYELENPKFDVEECRQRGITYAAPMRVTLRLIVFEVDPDTEARSVLDIKEQDVYMGDMPLMTENGTFFINGTERARHRQPDAPLAGRAVRP*