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SCNpilot_expt_1000_bf_scaffold_18927_7

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 4 ASCG 9 / 38 MC: 1
Location: 6857..7585

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.6
  • Coverage: 215.0
  • Bit_score: 396
  • Evalue 3.50e-107
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 85.6
  • Coverage: 215.0
  • Bit_score: 371
  • Evalue 2.10e-100
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingomonas elodea RepID=UPI0002630426 similarity UNIREF
DB: UNIREF100
  • Identity: 92.6
  • Coverage: 215.0
  • Bit_score: 402
  • Evalue 3.50e-109

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Taxonomy

Sphingomonas changbaiensis → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 729
GTGTACATCGGCGCCGAGGTCGAGCCGGGCGACATCCTGGTCGGCAAGATCACCCCCAAGGGTGAATCGCCGATGACGCCGGAGGAGAAGCTCCTCCGCGCCATCTTCGGCGAAAAGGCTTCGGACGTTCGCGACACCTCGCTCCGCCTGCCCCCGGGCGTGTCGGGCACGATCGTCGACGTGCGCGTGTTCAATCGTCATGGCATCGACAAGGACGAGCGCGCACTGGCGATCGAGCGCGAGGAAATCGAGCGCCTGAAGAAGGACAGCGACGACGAGCGCAACATCCTCAACCGCGCGACCTGGTCGCGTCTGCGCGAGATGCTGCTCGGCCAGGTCGCCACGGCGACGCCGAAGGGCCTGAAGAAGGGCTCCGAGATCGACGCGGACCTGCTCGACAGCGTGGATCGTCACGAATGGTGGAAGTTCGCCGTTCAGGACGACAAGGTCCAGGGCGACCTCGAGGCGGTGAAGGGCCAGTATGACGAGGCCGTGAAGCGCATCAAGGAGAAGTTCGAGGACCGCCGCGAGAAGCTGGAGCGGGGCGACGAGCTGCCGCCGGGCGTGCTCAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGCTGCAGCCGGGCGACAAGATGGCCGGCCGTCGCGCATCCTGCCACAGGAAGACATGCCGTTCCTCGAGGACGGCACTCCGGTCGACCTGGTGCTCAACCCGCTCGGCGTGCCTTCGCGCATGA
PROTEIN sequence
Length: 243
VYIGAEVEPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTIVDVRVFNRHGIDKDERALAIEREEIERLKKDSDDERNILNRATWSRLREMLLGQVATATPKGLKKGSEIDADLLDSVDRHEWWKFAVQDDKVQGDLEAVKGQYDEAVKRIKEKFEDRREKLERGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRRASCHRKTCRSSRTALRSTWCSTRSACLRA*