ggKbase home page

SCNpilot_expt_1000_bf_scaffold_18927_9

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 4 ASCG 9 / 38 MC: 1
Location: 8169..8363

Top 3 Functional Annotations

Value Algorithm Source
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 85.9
  • Coverage: 64.0
  • Bit_score: 113
  • Evalue 2.10e-23
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.9
  • Coverage: 64.0
  • Bit_score: 113
  • Evalue 9.40e-23
DNA-directed RNA polymerase subunit beta n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5C044 similarity UNIREF
DB: UNIREF100
  • Identity: 89.1
  • Coverage: 64.0
  • Bit_score: 115
  • Evalue 1.80e-23

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium aromaticivorans → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 195
GTGAAGTCGGACGACGTGGTCGGCCGCACCAAGGTCTACGAGGCGATCGTCAAGGGCGACGACACCTTCGAGGCCGGCATCCCCGAGAGCTTCAACGTGCTCGTCAAGGAAATGCGCTCGCTGGGCCTCAACGTCGAACTCAAGGCGATCGACGAAGCCTCCGAGGAAGACGGCCTGGCCGAGGCGGCGGAGTAA
PROTEIN sequence
Length: 65
VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKAIDEASEEDGLAEAAE*