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SCNpilot_expt_1000_bf_scaffold_12135_11

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_61_16

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Location: 6710..7027

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Methyloferula stellata RepID=UPI000368DC75 similarity UNIREF
DB: UNIREF100
  • Identity: 75.5
  • Coverage: 102.0
  • Bit_score: 150
  • Evalue 8.00e-34
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 74.7
  • Coverage: 95.0
  • Bit_score: 143
  • Evalue 5.30e-32
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.7
  • Coverage: 95.0
  • Bit_score: 143
  • Evalue 2.40e-31

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Taxonomy

Beijerinckia indica → Beijerinckia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 318
GTGACAAGTAGCCCTCAGCAAATCCAGGAAGCGGCGACCCCGTCGTTGAAAGCCGACATGATTGCGGCCATCCCGAGCTTGCGGGCTTTCGCGGTGTCGTTGTCCGGCAATGCGGATCGCGCCGACGACCTGGTGCAGGAAACCTTGGTGAAGGCTTGGGCCAATCTCGGCTCGTTTCAGGCCGGCACGAATCTATCGGCGTGGCTCTTCACCATTCTGCGCAACGTCTATTATTCCGAATATCGCAAACGCCGGCGCGAGGTCGCCGACAGCGACGGCGCTTTCGCCGCGCAGCTCATCGAGCCGGCAGCGCAAGAC
PROTEIN sequence
Length: 106
VTSSPQQIQEAATPSLKADMIAAIPSLRAFAVSLSGNADRADDLVQETLVKAWANLGSFQAGTNLSAWLFTILRNVYYSEYRKRRREVADSDGAFAAQLIEPAAQD