ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_expt_1000_bf_scaffold_12732_3

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_61_16

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Location: comp(1406..2170)

Top 3 Functional Annotations

Value Algorithm Source
GntR family transcriptional regulator, vanillate catabolism transcriptional regulator n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HQN5_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 64.3
  • Coverage: 244.0
  • Bit_score: 300
  • Evalue 2.00e-78
GntR family transcriptional regulator {ECO:0000313|EMBL:KJC40358.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.7
  • Coverage: 245.0
  • Bit_score: 301
  • Evalue 1.20e-78
vanR; GntR family transcriptional regulator; K11475 GntR family transcriptional regulator, vanillate catabolism transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 61.3
  • Coverage: 248.0
  • Bit_score: 293
  • Evalue 7.60e-77

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bradyrhizobium sp. LTSP885 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 765
ATGTCGCTCGCCGAACCCAGTGATCGCTCCAGTGAACGGAGCCCATCGCAAACGGTCACAGCGCTTTTGTCATTGCGTGAATTGATCGTCTCAGGTGCTTTGAAGTCCGGCGAGCGCATTTCCGAGCTGGCCATGGTCGATCGCATCGGCGTGTCCCGCACGCCGCTGCGCACCGCCCTGGTCAAACTCGAACAGGAAGGGCTGATCGAGGAAATTCCCTCCGGCGGCTATGCGGTGAAAGCCTTCAGCGAAGCCGACGTGTTCGATGCCATCGAAATTCGCGGCACCTTGGAAGGCCTCGCCGCGCGCTATGCGGCCGAGCGTGGCGTTGCCACCATGCGGCTTGCCGAATTGCGCGAATGCGTCGCCGAAATCGATACGGTGATCACCGCCGGCAGCCTGAGCGAAGAAGATTTCGAGGCTTATCTGCGCGCCAACGAACGCTTCCATACCCTGCTCATGGAATTGTCGGGCAGCCCGACCTTGCGGCGCGAGCTCGAACGGGTCAGCAGCCTGCCCTTTGCCTCGGCCAGCGCTTTCGTCAAAGCCGAAGCGGCCTTGCCGGAATCGCGCAGCATTCTGCCGATCGCCAACGAACATCACCGTGCCGTCGTCGATGCCATCGAAAACCGTGAAGGCGCGCGCGCCGAAGCGATCATGCGCGAACATGCACGGCTGTCCTATCGCAATCTGATGATGGCGCTGCGCAATCAGAAGGTTCTCGACCTCGTGCCGGGCGCCGCGCTGATCCGCCGCCGCAGCTAG
PROTEIN sequence
Length: 255
MSLAEPSDRSSERSPSQTVTALLSLRELIVSGALKSGERISELAMVDRIGVSRTPLRTALVKLEQEGLIEEIPSGGYAVKAFSEADVFDAIEIRGTLEGLAARYAAERGVATMRLAELRECVAEIDTVITAGSLSEEDFEAYLRANERFHTLLMELSGSPTLRRELERVSSLPFASASAFVKAEAALPESRSILPIANEHHRAVVDAIENREGARAEAIMREHARLSYRNLMMALRNQKVLDLVPGAALIRRRS*