ggKbase home page

SCNpilot_expt_1000_bf_scaffold_30944_3

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_61_16

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Location: comp(887..1450)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H9C1_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 52.4
  • Coverage: 164.0
  • Bit_score: 168
  • Evalue 5.10e-39
DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:ERF81056.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.4
  • Coverage: 164.0
  • Bit_score: 168
  • Evalue 7.10e-39
Invasion protein B, involved in pathogenesis similarity KEGG
DB: KEGG
  • Identity: 46.9
  • Coverage: 177.0
  • Bit_score: 155
  • Evalue 1.40e-35

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bradyrhizobium sp. DFCI-1 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
AATTCTGAAGGATCCGCCGTGCTTCGTTCTGTCATATGTGCCGCTTTGATGTCGGGTGTGGTCGTGTCGGGCGCCTGGGCGCAGGCATCGCAGCAGCAGCAGCAGCCTCAGTCCGCCTTGCCGGGTGGCGCGACCTCGTTGCGCGAGACTTTCGAGGATTGGCAGGTCGCCTGCGTCACCCAGAACAATGCCAAGCGTTGCGCTCTCGGACAGGAGCAGTTCGGCCAGAACCGTCAGCGCATCCTGGCGATCGAACTCGCCCCCGGCGACAACAATTCGCTCACCGGCACCCTGGTCATGCCTTTCGGCCTGCTGTTCGAACCGGGCATAACGATGCAGCTCGACGACAAGCCGTTCGGTAAGCCGTTGCGCGTGCGCACCTGCGTGCCGGCCGGCTGTATCGTGCCGCTGCAATTCGACGCCGCGACATCCAACGCGCTGCGCGGCGGCACGACCTTGAAGCTGAGCGCGACGCCGAGCGAAAGCAATACGCCGGTCAATTTTACGATTTCGCTCAAGGGTTTTTCGGCGGGCCTCAACCGCACCGTTGCCCTGGCGAAATAA
PROTEIN sequence
Length: 188
NSEGSAVLRSVICAALMSGVVVSGAWAQASQQQQQPQSALPGGATSLRETFEDWQVACVTQNNAKRCALGQEQFGQNRQRILAIELAPGDNNSLTGTLVMPFGLLFEPGITMQLDDKPFGKPLRVRTCVPAGCIVPLQFDAATSNALRGGTTLKLSATPSESNTPVNFTISLKGFSAGLNRTVALAK*