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SCNpilot_expt_1000_bf_scaffold_33863_2

Organism: SCNPILOT_EXPT_750_P_Sphingobacteriia_41_24

partial RP 14 / 55 MC: 1 BSCG 10 / 51 ASCG 6 / 38
Location: 1487..1795

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1Z5_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 63.7
  • Coverage: 102.0
  • Bit_score: 148
  • Evalue 3.90e-33
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 63.7
  • Coverage: 102.0
  • Bit_score: 148
  • Evalue 1.20e-33
Contig24, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78080.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.8
  • Coverage: 102.0
  • Bit_score: 148
  • Evalue 4.20e-33

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Taxonomy

Pedobacter sp. NL19 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 309
ATGAAAGCACAGCTGCTTCATTTAAACAGCAATCTTGAGCATTCGTTCAACGCGCGTAGAGACAATACACCTCAGTACCATAATCTTTGGCATTACCACGAAGAACTGGAATTAATTTATTTCGCCAAAGGCTCAGGCACCCAATTTATTGGCGATAGTGTCCGGCGCTTTGAATCGGGCGATATCACCCTTGTGGGTTCAAACCTACCTCATTATTGGTTATTTGACGAAATTTATCTTCAAGAGGAAGAAGCAGAAAGCGCAGATATTCGTGTGCTTCATTTTAAAGAGAACTTTTGGGGAAATGAT
PROTEIN sequence
Length: 103
MKAQLLHLNSNLEHSFNARRDNTPQYHNLWHYHEELELIYFAKGSGTQFIGDSVRRFESGDITLVGSNLPHYWLFDEIYLQEEEAESADIRVLHFKENFWGND