ggKbase home page

SCNpilot_expt_1000_bf_scaffold_21487_1

Organism: SCNpilot_P_inoc_Novosphingobium_63_5

partial RP 10 / 55 BSCG 9 / 51 ASCG 2 / 38
Location: comp(2..121)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 40.0
  • Bit_score: 80
  • Evalue 5.40e-13
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 77.3
  • Coverage: 44.0
  • Bit_score: 64
  • Evalue 9.00e-09
DNA-directed RNA polymerase subunit beta n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZY89_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 40.0
  • Bit_score: 80
  • Evalue 3.90e-13

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 120
ATGGCAAGCAAGGCGAAAGCTCCCGCCATTTCCGGCACCGCCAAGAAGCGCATCCGCAAGATCTTCGGCGACATCCACGAAGTGGTGCAGATGCCGAACCTGATCGAGGTTCAGCGCGAA
PROTEIN sequence
Length: 40
MASKAKAPAISGTAKKRIRKIFGDIHEVVQMPNLIEVQRE