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SCNpilot_expt_1000_bf_scaffold_29633_1

Organism: SCNpilot_P_inoc_Novosphingobium_63_5

partial RP 10 / 55 BSCG 9 / 51 ASCG 2 / 38
Location: 1..129

Top 3 Functional Annotations

Value Algorithm Source
TolC-like protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZU73_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 89.7
  • Coverage: 39.0
  • Bit_score: 77
  • Evalue 2.70e-12
TolC-like protein {ECO:0000313|EMBL:GAD48914.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 39.0
  • Bit_score: 77
  • Evalue 3.80e-12
outer membrane channel protein TolC; K12340 outer membrane channel protein similarity KEGG
DB: KEGG
  • Identity: 71.4
  • Coverage: 42.0
  • Bit_score: 72
  • Evalue 2.70e-11

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Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 129
GATCCGCAGGTCAATTATGACCGGGTAAAGGGTAAAATCTGGGACTGGTCGTTCGATCCCGATCCGGTCGCACAGTCAACGCGGACCGTTGACACGCCGACGCAGGACGGCGAAATTCCGAAACAATAG
PROTEIN sequence
Length: 43
DPQVNYDRVKGKIWDWSFDPDPVAQSTRTVDTPTQDGEIPKQ*