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SCNpilot_expt_1000_bf_scaffold_31499_2

Organism: SCNPILOT_EXPT_750_P_Alphaproteobacteria_36_9_partial

partial RP 2 / 55 BSCG 2 / 51 ASCG 0 / 38
Location: comp(988..1431)

Top 3 Functional Annotations

Value Algorithm Source
30S ribosomal protein S1 id=3710603 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + similarity UNIREF
DB: UNIREF100
  • Identity: 56.6
  • Coverage: 143.0
  • Bit_score: 158
  • Evalue 7.00e-36
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.6
  • Coverage: 143.0
  • Bit_score: 158
  • Evalue 9.90e-36
rpsA; 30S ribosomal subunit protein S1 similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 111.0
  • Bit_score: 151
  • Evalue 2.10e-34

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 444
AATGATATCGTTACATGCGAAATCACCTCAATTCAAGAAGCCGGTATTGAAGTTAAGGTTACCGAAGGAATAGATGGTTTTATTCGTAAAACTGACTTATCTAAAGAAAGGACTGAACAACGCACTGACCGTTTTGCAGTCGGTGAAAAAGTTGATGCAAAGATTATTAATATTGATCGCTCCGCACGACGCGTTAGTCTTTCAATCAAAGGTCGTGAAATTGCTGAAGAAAAAGAAGCTATGGCAACCTATGGTTCAGCAGACAGTGGCGCAAGCTTAGGTGATATTCTTGGTGCAGCCTTTGATAAAGTAAAAGAAAAAACCAACGAAGAAAAACCAGAAGAAAAGAAAACCACTAAAGCAGCAGCAAAACCAAAAGAAGAAAAACCTGCTAAAACTTCAAAGAAAAAAGCATCTGAACCAAACACTGATGGTGATGCATAA
PROTEIN sequence
Length: 148
NDIVTCEITSIQEAGIEVKVTEGIDGFIRKTDLSKERTEQRTDRFAVGEKVDAKIINIDRSARRVSLSIKGREIAEEKEAMATYGSADSGASLGDILGAAFDKVKEKTNEEKPEEKKTTKAAAKPKEEKPAKTSKKKASEPNTDGDA*