ggKbase home page

SCNpilot_expt_1000_bf_scaffold_55629_2

Organism: SCNPILOT_EXPT_300_BF_Alicycliphilus_69_12

partial RP 0 / 55 BSCG 0 / 51 ASCG 0 / 38
Location: comp(108..620)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Comamonas testosteroni S44 RepID=D8D2G8_COMTE similarity UNIREF
DB: UNIREF100
  • Identity: 84.7
  • Coverage: 150.0
  • Bit_score: 262
  • Evalue 3.10e-67
RNA polymerase, sigma-24 subunit, ECF subfamily protein {ECO:0000313|EMBL:EFI62675.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.7
  • Coverage: 150.0
  • Bit_score: 262
  • Evalue 4.30e-67
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 77.8
  • Coverage: 162.0
  • Bit_score: 250
  • Evalue 4.90e-64

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Comamonas testosteroni → Comamonas → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 513
ATGCCGGGCCCTCATGCCTTCCTCTTCCAGCCTCCCGCACCGCGACATCACCGCCCTCCCCACCACGGCTGGCTGCAGGGCTGGCTGCACCGCCGGCTCGGCAATGCCTTCGACGCTGCCGACCTCGCGCAGGACACCTTCGTGCGCATCCTGGGCGTGCGCGATCCGCAGGCCATCGAAACGCCCCGCGCCTACCTGACCACGGTGGCCAAGGGCGTGCTGGTCAACTGGTGCCGGCGCCAGGCGCTGGAGCGCGCCTACCTGGAGGCGCTGGCCCTGCTGCCCGCGCCGGAGGCGCCGTCGCCCGAGCAGCGCGCCGTGGTGCTGGAGACCCTGTACGAGATCGACGCCATGCTCGATGCGCTGCCGCCGCTGGCGCGGCGCGCGTTCCTGCTGTCGCAGCTCGACGGCATGAAGTACGAAGACATCGCCCGGCAGCTCGGCGTGTCGCTCACCAGCGTCAAGCGCTACATGGCCCAGGCCTTCCGCCGCTGCCTGGCCTTGGTGGACTGA
PROTEIN sequence
Length: 171
MPGPHAFLFQPPAPRHHRPPHHGWLQGWLHRRLGNAFDAADLAQDTFVRILGVRDPQAIETPRAYLTTVAKGVLVNWCRRQALERAYLEALALLPAPEAPSPEQRAVVLETLYEIDAMLDALPPLARRAFLLSQLDGMKYEDIARQLGVSLTSVKRYMAQAFRRCLALVD*