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SCNpilot_cont_750_p_UNK

In projects: SCNPILOT_CONT_750_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.68 Longest contig: 77.80 Kbp Bin length: 113.12 Mbp GC content: 56.02 %
Contigs count: 58943 Features count: 154683 rRNAs count: 22 tRNAs count: 459

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 20
Displaying items 58901-58943 of 58943 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_p_scaffold_85635 2 1008 bp 63.39 4.96 108.04
SCNpilot_cont_750_p_scaffold_58983
Species: Streptomyces sp. AA4 (50%)
2 1342 bp 69.23 2.24 108.20
SCNpilot_cont_750_p_scaffold_55525 4 1405 bp 59.86 7.47 108.47
SCNpilot_cont_750_p_scaffold_37806
Species: Microbacterium azadirachtae (50%)
2 1877 bp 69.74 5.19 108.52
SCNpilot_cont_750_p_scaffold_60726 2 1313 bp 58.04 7.43 108.76
SCNpilot_cont_750_p_scaffold_64386 4 1255 bp 57.21 7.77 109.00
SCNpilot_cont_750_p_scaffold_80820 2 1054 bp 55.60 4.98 109.01
SCNpilot_cont_750_p_scaffold_81965
Species: Drosophila willistoni (50%)
2 1042 bp 59.31 10.32 109.41
SCNpilot_cont_750_p_scaffold_56583 3 1386 bp 57.79 5.59 109.52
SCNpilot_cont_750_p_scaffold_58882
Order: Sphingomonadales (66.67%)
3 1344 bp 59.15 3.35 109.60
SCNpilot_cont_750_p_scaffold_65032
Species: Gordonia effusa (50%)
2 1245 bp 65.22 2.41 109.64
SCNpilot_cont_750_p_scaffold_76897 3 1094 bp 50.27 5.71 109.69
SCNpilot_cont_750_p_scaffold_55345 3 1408 bp 48.15 4.62 109.73
SCNpilot_cont_750_p_scaffold_72365 4 1148 bp 48.34 4.57 109.76
SCNpilot_cont_750_p_scaffold_72367 2 1148 bp 45.38 4.79 109.76
SCNpilot_cont_750_p_scaffold_64977
Species: Kibdelosporangium sp. MJ126-NF4 (50%)
2 1246 bp 59.55 4.41 109.79
SCNpilot_cont_750_p_scaffold_62667 2 1281 bp 65.65 4.49 110.07
SCNpilot_cont_750_p_scaffold_60474
Species: Mycobacterium aromaticivorans (50%)
2 1317 bp 64.92 3.04 110.25
SCNpilot_cont_750_p_scaffold_54573 3 1424 bp 60.25 9.66 110.39
SCNpilot_cont_750_p_scaffold_47439
Species: Singulisphaera acidiphila (50%)
2 1583 bp 67.59 5.69 110.68
SCNpilot_cont_750_p_scaffold_86065 2 1004 bp 58.86 7.22 110.86
SCNpilot_cont_750_p_scaffold_65944 3 1232 bp 49.19 4.46 111.04
SCNpilot_cont_750_p_scaffold_45757
Species: Burkholderia glathei (50%)
2 1626 bp 69.07 6.92 111.07
SCNpilot_cont_750_p_scaffold_61672
Species: Leifsonia aquatica (66.67%)
3 1298 bp 70.49 3.47 111.17
SCNpilot_cont_750_p_scaffold_64007 4 1261 bp 55.59 7.14 111.34
SCNpilot_cont_750_p_scaffold_86060 2 1004 bp 56.77 10.71 111.45
SCNpilot_cont_750_p_scaffold_74241 2 1125 bp 45.24 4.00 111.73
SCNpilot_cont_750_p_scaffold_77029
Species: Naegleria gruberi (50%)
2 1092 bp 49.54 5.04 111.81
SCNpilot_cont_750_p_scaffold_51082
Order: Xanthomonadales (66.67%)
3 1498 bp 66.36 23.20 112.15
SCNpilot_cont_750_p_scaffold_83259 3 1030 bp 59.03 7.04 112.72
SCNpilot_cont_750_p_scaffold_76095 3 1103 bp 48.87 5.44 112.87
SCNpilot_cont_750_p_scaffold_64632 2 1252 bp 45.93 3.19 113.10
SCNpilot_cont_750_p_scaffold_56462 3 1389 bp 53.78 4.50 113.39
SCNpilot_cont_750_p_scaffold_86383 2 1001 bp 44.36 3.00 113.59
SCNpilot_cont_750_p_scaffold_85106
Species: Fluoribacter dumoffii (50%)
2 1012 bp 36.76 2.22 113.83
SCNpilot_cont_750_p_scaffold_76166 2 1102 bp 60.62 5.22 114.34
SCNpilot_cont_750_p_scaffold_71421
Species: Alicycliphilus denitrificans (100%)
2 1159 bp 70.49 4.31 114.67
SCNpilot_cont_750_p_scaffold_73080
Species: Nitratireductor basaltis (50%)
2 1139 bp 67.43 3.51 115.10
SCNpilot_cont_750_p_scaffold_69553
Species: Thauera sp. SWB20 (50%)
2 1184 bp 68.07 7.18 115.54
SCNpilot_cont_750_p_scaffold_76015 2 1104 bp 69.29 9.96 115.76
SCNpilot_cont_750_p_scaffold_78842 2 1073 bp 46.88 7.22 116.03
SCNpilot_cont_750_p_scaffold_58783 4 1346 bp 41.01 29.72 117.46
SCNpilot_cont_750_p_scaffold_80477 2 1057 bp 45.70 10.17 117.79
Displaying items 58901-58943 of 58943 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.