ggKbase home page

SCNpilot_cont_750_bf_scaffold_926_3

Organism: SCNpilot_cont_750_bf_UNK

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 15
Location: comp(1880..2128)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=3 Tax=Bradyrhizobiaceae RepID=HFQ_RHOP2 similarity UNIREF
DB: UNIREF100
  • Identity: 98.8
  • Coverage: 82.0
  • Bit_score: 170
  • Evalue 7.70e-40
hfq; RNA-binding protein Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 98.8
  • Coverage: 82.0
  • Bit_score: 170
  • Evalue 2.40e-40
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.8
  • Coverage: 82.0
  • Bit_score: 170
  • Evalue 1.10e-39

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Afipia clevelandensis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 249
ATGGCGGCAGACCGCGCACAAAACCTACAAGACACTTTCCTGAATCACGTTCGCAAAACCAAAACACCGCTGACCATATTCCTGGTGAACGGCGTAAAGTTGCAAGGGATCGTGACCTGGTTTGATAATTTCTGCCTGCTTTTGCGGCGCGACGGTCATTCGCAGCTTGTCTACAAGCATGCAATTTCGACCATTATGCCGGGCGCACCGGTCCAGTTGTTTGAGGGTGGTGAGGACTCGCCTGCGTGA
PROTEIN sequence
Length: 83
MAADRAQNLQDTFLNHVRKTKTPLTIFLVNGVKLQGIVTWFDNFCLLLRRDGHSQLVYKHAISTIMPGAPVQLFEGGEDSPA*