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SCNpilot_cont_750_bf_UNK

In projects: SCNPILOT_CONT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 12.12 Longest contig: 237.87 Kbp Bin length: 61.05 Mbp GC content: 60.34 %
Contigs count: 22393 Features count: 76023 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 15
Displaying items 251-300 of 22393 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_bf_scaffold_26296
Species: Isoptericola variabilis (50%)
2 1523 bp 70.39 3.61 101.05
SCNpilot_cont_750_bf_scaffold_24886
Species: BJP_IG2103_SUB10_Xanthomonadales_61_45 (50%)
4 2384 bp 69.84 1.57 101.05
SCNpilot_cont_750_bf_scaffold_40462
Species: Naegleria gruberi (50%)
2 1820 bp 32.64 4.40 101.04
SCNpilot_cont_750_bf_scaffold_19778
Species: Leifsonia xyli (50%)
2 3833 bp 66.32 2.09 101.04
SCNpilot_cont_750_bf_scaffold_24214
Genus: Mesorhizobium (100%)
3 1633 bp 66.01 2.30 101.04
SCNpilot_cont_750_bf_scaffold_36380
Species: Tatumella morbirosei (50%)
2 1155 bp 63.81 1.95 101.04
SCNpilot_cont_750_bf_scaffold_33030
Domain: Bacteria (66.67%)
3 1253 bp 62.33 4.19 101.04
SCNpilot_cont_750_bf_scaffold_39564
Species: Caulobacter sp. AP07 (100%)
2 1066 bp 68.67 3.05 101.03
SCNpilot_cont_750_bf_scaffold_35761
Species: Mesorhizobium sp. ORS3359 (50%)
2 1173 bp 62.15 2.56 101.02
SCNpilot_cont_750_bf_scaffold_39109
Species: Kineococcus radiotolerans (50%)
2 1078 bp 66.51 3.48 101.02
SCNpilot_cont_750_bf_scaffold_32188
Order: Legionellales (66.67%)
3 1280 bp 42.27 2.34 101.02
SCNpilot_cont_750_bf_scaffold_20750
Order: Micrococcales (66.67%)
3 1871 bp 69.11 2.27 101.02
SCNpilot_cont_750_bf_scaffold_27528
Species: Rhodopseudomonas palustris (66.67%)
3 2171 bp 64.85 8.52 101.01
SCNpilot_cont_750_bf_scaffold_32079
Species: Actinotalea fermentans (50%)
2 1283 bp 65.94 4.87 101.01
SCNpilot_cont_750_bf_scaffold_27149
Genus: Bradyrhizobium (50%)
4 1975 bp 65.72 20.00 101.01
SCNpilot_cont_750_bf_scaffold_38815
Order: Burkholderiales (50%)
4 1087 bp 69.27 4.14 101.01
SCNpilot_cont_750_bf_scaffold_42041
Species: Roseibium sp. TrichSKD4 (50%)
2 1001 bp 71.43 3.25 101.00
SCNpilot_cont_750_bf_scaffold_38175
Species: Bradyrhizobium sp. DFCI-1 (100%)
2 1105 bp 63.89 8.37 100.99
SCNpilot_cont_750_bf_scaffold_41818
Species: Dyella japonica (50%)
2 1007 bp 68.62 1.00 100.99
SCNpilot_cont_750_bf_scaffold_37967
Species: Sinorhizobium fredii (50%)
2 1111 bp 66.97 4.28 100.99
SCNpilot_cont_750_bf_scaffold_38854
Species: BJP_08E140C01_Actinomycetales_67_18 (50%)
2 2029 bp 70.38 2.83 100.99
SCNpilot_cont_750_bf_scaffold_28350
Species: Bradyrhizobium sp. STM 3809 (50%)
2 1426 bp 65.92 1.40 100.98
SCNpilot_cont_750_bf_scaffold_41333
Species: Agrobacterium tumefaciens (50%)
2 1019 bp 59.37 1.00 100.98
SCNpilot_cont_750_bf_scaffold_22310
Class: Alphaproteobacteria (80%)
5 2885 bp 63.05 16.72 100.97
SCNpilot_cont_750_bf_scaffold_20920
Species: Streptomyces sp. PRh5 (50%)
2 1857 bp 71.78 3.90 100.97
SCNpilot_cont_750_bf_scaffold_25832
Species: Afipia sp. P52-10 (50%)
2 1548 bp 70.41 1.61 100.97
SCNpilot_cont_750_bf_scaffold_19494
Class: Actinobacteria (50%)
6 1976 bp 68.67 3.80 100.96
SCNpilot_cont_750_bf_scaffold_33220
Class: Alphaproteobacteria (66.67%)
3 1248 bp 68.03 3.00 100.96
SCNpilot_cont_750_bf_scaffold_40509
Species: Actinobaculum sp. oral taxon 183 (50%)
2 1040 bp 69.62 3.37 100.96
SCNpilot_cont_750_bf_scaffold_22223
Order: Rhizobiales (66.67%)
3 3649 bp 68.57 4.04 100.96
SCNpilot_cont_750_bf_scaffold_44065
Species: Microbacterium ginsengisoli (50%)
2 1670 bp 70.18 1.50 100.96
SCNpilot_cont_750_bf_scaffold_36643
Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (50%)
2 1988 bp 68.31 61.24 100.96
SCNpilot_cont_750_bf_scaffold_32869
Order: Rhizobiales (50%)
4 1257 bp 66.19 62.45 100.96
SCNpilot_cont_750_bf_scaffold_36449
Species: Eucalyptus grandis (50%)
2 1153 bp 59.15 1.00 100.95
SCNpilot_cont_750_bf_scaffold_40232
Species: Rhodopseudomonas palustris (50%)
4 2639 bp 64.87 3.13 100.95
SCNpilot_cont_750_bf_scaffold_27016 2 1489 bp 35.12 8.73 100.94
SCNpilot_cont_750_bf_scaffold_26441
Species: Microbacterium mangrovi (100%)
3 1516 bp 72.16 2.64 100.92
SCNpilot_cont_750_bf_scaffold_17795
Species: Sphingomonas sp. BHC-A (50%)
2 3255 bp 59.88 4.76 100.92
SCNpilot_cont_750_bf_scaffold_32037 3 2286 bp 35.74 4.16 100.92
SCNpilot_cont_750_bf_scaffold_22375
Species: Methylobacterium nodulans (50%)
4 1751 bp 58.20 3.71 100.91
SCNpilot_cont_750_bf_scaffold_35672
Species: Rhodopseudomonas palustris (50%)
2 2628 bp 61.91 18.74 100.91
SCNpilot_cont_750_bf_scaffold_18271
Species: Devosia sp. DDB001 (50%)
4 2090 bp 65.50 1.67 100.91
SCNpilot_cont_750_bf_scaffold_14905
Species: Leifsonia aquatica (50%)
4 3193 bp 72.53 3.99 100.91
SCNpilot_cont_750_bf_scaffold_8404
Genus: Microbacterium (80%)
5 5450 bp 73.71 4.68 100.90
SCNpilot_cont_750_bf_scaffold_30543
Species: Rhodococcus erythropolis (50%)
2 1338 bp 71.52 4.48 100.90
SCNpilot_cont_750_bf_scaffold_37407
Species: Legionella longbeachae (100%)
2 1127 bp 40.99 2.22 100.89
SCNpilot_cont_750_bf_scaffold_33507
Species: Nitratireductor basaltis (50%)
2 1240 bp 68.15 3.02 100.89
SCNpilot_cont_750_bf_scaffold_27448
Species: Nitratireductor basaltis (50%)
2 1469 bp 71.55 1.70 100.89
SCNpilot_cont_750_bf_scaffold_33190 3 1249 bp 60.93 3.00 100.88
SCNpilot_cont_750_bf_scaffold_25961
Species: Afipia sp. 1NLS2 (66.67%)
3 3438 bp 67.77 10.11 100.87
Displaying items 251-300 of 22393 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.