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SCNpilot_expt_500_p_UNK

In projects: SCNPILOT_EXPT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 16.95 Longest contig: 47.31 Kbp Bin length: 52.59 Mbp GC content: 39.88 %
Contigs count: 26252 Features count: 68125 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 50 / 55 MC: 48 BSCG 50 / 51 MC: 48 ASCG 27 / 38 MC: 20
Displaying items 1-50 of 26252 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_43054
Species: Brevibacterium linens (50%)
2 1279 bp 65.68 1.56 114.70
SCNpilot_expt_500_p_scaffold_44955
Species: Bradyrhizobium sp. LTSPM299 (50%)
2 1231 bp 67.91 4.26 114.05
SCNpilot_expt_500_p_scaffold_54711 3 1041 bp 39.67 1.00 113.83
SCNpilot_expt_500_p_scaffold_52192
Species: Rhizobium etli (50%)
2 1083 bp 56.14 3.00 112.19
SCNpilot_expt_500_p_scaffold_49393 2 1136 bp 24.30 12.76 109.86
SCNpilot_expt_500_p_scaffold_52004 2 1087 bp 43.33 6.21 109.84
SCNpilot_expt_500_p_scaffold_93293
Species: Delftia sp. RIT313 (50%)
2 1041 bp 76.75 3.84 109.80
SCNpilot_expt_500_p_scaffold_55968 3 1022 bp 54.79 3.67 109.79
SCNpilot_expt_500_p_scaffold_42428 3 1295 bp 60.08 1.00 109.58
SCNpilot_expt_500_p_scaffold_52358
Species: Penicillium oxalicum (50%)
2 1081 bp 55.32 1.85 109.07
SCNpilot_expt_500_p_scaffold_42138
Species: uncultured bacterium (50%)
2 1303 bp 57.87 5.56 107.98
SCNpilot_expt_500_p_scaffold_51977 2 1087 bp 54.83 1.00 107.91
SCNpilot_expt_500_p_scaffold_59741 3 1389 bp 34.56 118.97 107.34
SCNpilot_expt_500_p_scaffold_43520
Species: Pseudomonas aeruginosa (50%)
2 1267 bp 62.19 2.76 107.02
SCNpilot_expt_500_p_scaffold_26962
Order: Dictyosteliida (50%)
6 1961 bp 47.17 2.80 106.94
SCNpilot_expt_500_p_scaffold_36656
Phylum: Proteobacteria (50%)
4 1479 bp 70.79 3.55 106.90
SCNpilot_expt_500_p_scaffold_55410 4 1030 bp 41.36 2.18 106.60
SCNpilot_expt_500_p_scaffold_34339 3 1571 bp 53.85 51.08 106.37
SCNpilot_expt_500_p_scaffold_51093 3 1104 bp 47.55 1.81 106.25
SCNpilot_expt_500_p_scaffold_55526 2 1028 bp 37.45 1.46 105.64
SCNpilot_expt_500_p_scaffold_38346
Phylum: Bacteroidetes (50%)
4 1419 bp 35.38 6.34 105.29
SCNpilot_expt_500_p_scaffold_53450 3 1062 bp 41.90 3.30 105.09
SCNpilot_expt_500_p_scaffold_51764
Species: Rhizoctonia solani (50%)
2 1091 bp 29.88 42.39 105.04
SCNpilot_expt_500_p_scaffold_57312 2 1001 bp 58.54 6.74 104.90
SCNpilot_expt_500_p_scaffold_53372 2 1064 bp 57.61 4.23 104.89
SCNpilot_expt_500_p_scaffold_47714
Species: Hyphomicrobium sp. MC1 (100%)
2 1170 bp 63.16 1.28 104.62
SCNpilot_expt_500_p_scaffold_20268
Domain: Bacteria (50%)
4 2535 bp 37.67 5.33 104.26
SCNpilot_expt_500_p_scaffold_37931
Species: Saprolegnia diclina (50%)
2 1434 bp 57.32 2.09 104.18
SCNpilot_expt_500_p_scaffold_53959 3 1054 bp 63.00 1.00 104.18
SCNpilot_expt_500_p_scaffold_47317
Species: Bacillus lehensis (100%)
3 1179 bp 40.20 1.70 104.07
SCNpilot_expt_500_p_scaffold_47323
Species: Strongylocentrotus purpuratus (50%)
2 1178 bp 67.32 2.33 103.91
SCNpilot_expt_500_p_scaffold_47175
Species: Marinobacter sp. ELB17 (50%)
2 1181 bp 64.78 1.00 103.90
SCNpilot_expt_500_p_scaffold_55345 2 1031 bp 55.00 5.82 103.88
SCNpilot_expt_500_p_scaffold_44536
Species: Sorghum bicolor (50%)
2 1242 bp 35.67 4.43 103.87
SCNpilot_expt_500_p_scaffold_51684 3 1093 bp 37.88 1.00 103.75
SCNpilot_expt_500_p_scaffold_46039
Species: Ancylostoma ceylanicum (50%)
2 1206 bp 40.80 8.29 103.48
SCNpilot_expt_500_p_scaffold_62505
Species: Rhodanobacter thiooxydans (66.67%)
3 1293 bp 70.30 21.08 103.48
SCNpilot_expt_500_p_scaffold_56590
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1012 bp 40.51 1.00 103.46
SCNpilot_expt_500_p_scaffold_47916
Species: Pandoraea pnomenusa (50%)
2 1166 bp 56.17 9.86 103.43
SCNpilot_expt_500_p_scaffold_52435
Species: Cardiobacterium valvarum (50%)
2 1079 bp 35.40 4.63 103.43
SCNpilot_expt_500_p_scaffold_47069
Species: Legionella pneumophila (66.67%)
3 1184 bp 35.05 6.55 103.38
SCNpilot_expt_500_p_scaffold_41781 3 1313 bp 57.27 1.00 103.28
SCNpilot_expt_500_p_scaffold_28110 3 1887 bp 52.09 4.24 103.18
SCNpilot_expt_500_p_scaffold_51225
Species: Acidovorax sp. KKS102 (100%)
2 1102 bp 65.43 4.54 103.18
SCNpilot_expt_500_p_scaffold_33610
Genus: Flavobacterium (66.67%)
3 1603 bp 37.18 8.89 103.12
SCNpilot_expt_500_p_scaffold_50826
Species: Afipia broomeae (50%)
2 1109 bp 62.94 3.61 103.07
SCNpilot_expt_500_p_scaffold_38572
Species: Reticulomyxa filosa (50%)
2 2023 bp 38.01 68.46 103.07
SCNpilot_expt_500_p_scaffold_35235
Species: Sorghum bicolor (50%)
2 1534 bp 54.56 3.42 103.06
SCNpilot_expt_500_p_scaffold_67422
Species: Acetobacteraceae bacterium AT-5844 (50%)
2 1278 bp 62.60 1.56 103.05
SCNpilot_expt_500_p_scaffold_40575
Species: uncultured bacterium (66.67%)
3 1348 bp 32.34 3.34 103.04
Displaying items 1-50 of 26252 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.