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SCNpilot_cont_500_bf_scaffold_59296_1

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_65_9_partial

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 ASCG 12 / 38
Location: 2..847

Top 3 Functional Annotations

Value Algorithm Source
rpoC; DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 92.5
  • Coverage: 280.0
  • Bit_score: 503
  • Evalue 4.10e-140
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.5
  • Coverage: 280.0
  • Bit_score: 503
  • Evalue 1.80e-139
DNA-directed RNA polymerase subunit beta' n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS71_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 92.5
  • Coverage: 280.0
  • Bit_score: 503
  • Evalue 1.30e-139

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Taxonomy

Sphingobium sp. SYK-6 → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 846
AAGGACAATGCCATCATTGCCAAGGCATCGGGCCGCGTGCAGTGCCTCAAGGACTATAAGGCGAAGCGCAAGATCGCCATCGTTCCCGAGGATGGCGGCGAGCCGGTCGAGTATCTGATCCCCAAGAGCAAGGTGATCGACGTTCAGGAAGGCGACTACGTGAAGCGTGGCGACAACCTGATCGGTGGTTCGCCGGATCCGCATGACATTCTGGAAGTGCTCGGCATCGAGCCGCTGGCTGAATATCTGGTCAGCGAAATCCAGGAAGTCTATCGACTCCAGGGCGTGAAGATCAACGACAAGCACATCGAAACGATCGTTCGTCAGATGCTGCAGAAGGTCGAGATCACCGACGGCGGCGACACCACGCTGCTCGCCGGCGAACAGGTCGATCGCGATGAGATGGACGAGGCCAATGATCGCCTATCGCCCGGCCAGAAGCCGGCTGAAGGCAAGCCTGTCCTGCTGGGCATCACCAAGGCGTCGCTGCAGACCCGCAGCTTCATCTCGGCAGCGTCCTTCCAGGAAACGACCCGCGTCCTCACCGAGGCGGCCGTTCAGGGCAAGAAGGACCAGCTCATCGGCCTCAAGGAGAATGTGATCGTCGGTCGCCTGATCCCGGCCGGCACCGGCGCCTCCATGAACCGCATGCGCATCGCAGCCAACAGCCGCGACGCTGCTCTGCGGGCCGCCATGCGCGTTGCCAACGAGGTTCACCTCGTCGCGCCGCAGACCGCAGCAGAAGAGCATGCTGCGGAACTGAAGGAAGGTCCGGAAGCGGCAATGGGCGATGATCCGCTCGGTGCCGTGCAGGGTGAAGACTTCACCACCGAAGATCTGGATTGA
PROTEIN sequence
Length: 282
KDNAIIAKASGRVQCLKDYKAKRKIAIVPEDGGEPVEYLIPKSKVIDVQEGDYVKRGDNLIGGSPDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITDGGDTTLLAGEQVDRDEMDEANDRLSPGQKPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTEAAVQGKKDQLIGLKENVIVGRLIPAGTGASMNRMRIAANSRDAALRAAMRVANEVHLVAPQTAAEEHAAELKEGPEAAMGDDPLGAVQGEDFTTEDLD*