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SCNpilot_cont_500_bf_scaffold_946_19

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: 17596..20751

Top 3 Functional Annotations

Value Algorithm Source
Resistance nodulation cell division (RND) drug efflux pump, inner membrane component n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSS5_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 84.9
  • Coverage: 999.99
  • Bit_score: 1706
  • Evalue 0.0
  • rbh
Multidrug resistance protein MdtB {ECO:0000313|EMBL:GAK72115.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.0
  • Coverage: 999.99
  • Bit_score: 1732
  • Evalue 0.0
resistance nodulation cell division (RND) drug efflux pump, inner membrane component similarity KEGG
DB: KEGG
  • Identity: 84.9
  • Coverage: 999.99
  • Bit_score: 1706
  • Evalue 0.0
  • rbh

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Taxonomy

Agrobacterium rubi → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3156
ATGACGGCTGGTTCTGGGCATGATCGCGACCAGTCGGACACTTCGAGTTTCTTTAACTTCTTTATTGATCATCCAGTCGCAACCGGCCTGATCATGCTCGGCATCTTTCTTGTCGGCGCGATCTGTTATCCCTTCATGCCGGTATCGGCTCTGCCGCAAATCGACTTTCCGACAGTCCAAATCGCTGCGAGCTTGCCTGGCGCGTCCCCGGATACCATGGCGTCAAGTGTCGCGCAGCCGATAGAGGAGGCGTTGTCGCGGGTGAGCGGCATCACCGAGATGACGTCTACCAGCTCTCTGGGAACGGCATCAATAACGGTCCAGTTTGACTTGGGCGAGGATATCCAGACGGCGGCTAGCGATGTGCAAACAGCGATCAGCGAGGCGTCCAGCCAGTTGCCGAAGGACATGCCGTCACTGCCGACCGTGAGGAAAGTCAATCCGGCCGATGCCCCTATCATGCAGTTGTCGGCAAACTCGGACAGCCTCACCTTGCCGGAGCTCGACGAATATATCGAACGCAATATCGCAACCAAAATCGGTCAAGTTTCCGGCGTGGCCTACGTCAATATCGGCGGAAAGCAAAAGCCGGCAATCCGGATAGCCGTCGATCCTGGGCGGTTGGCCCAGGCGGACGTCACGCTCGAAGATTTGCGATCGGCAATCGGCAATCTCAGCCTAAGCGCGCCCAAAGGCAATATCGACGATCCGACGCGAACATTTCCCATTGATACCAACGACCAGATCACCACCACCACTGAATGGAACGATGCCGTCATCGCCTACCGCAATGGCGGACCGGTTCGCATTCGCGACATCGGTCAGGCCGTCGACGGCGCAGAAGATGCGAAGATGGCGCACTGGACGAATGGAGAGCGTGGTATCGCGCTTGATGTCTTCCGCCAGCCTGGCGCCAATGTCATTGCGGTGGTCGACGCCGTCAAATCGCAGCTGCCAGCATTGCAGGCATCCTTGCCGCGGTCGATCACGCTTAAACTGGTAACTGATCGCACGACGACAATCAGAGCTTCGGTCGACGATGTGCAGTTTACCCTGGTGCTGACCATCGGACTTGTGGTTTTGGTGATCTTCCTGTTTCTGCGCAGCATTCGCGCGACCATCATTCCCGTGCTCACGCTGCCGATTGCCTTGGTCGGTTCACTGGCGCCCATGTGGGTTCTCGGCTTCAGCCTCGACAATTTGTCGCTCATGGCTCTCGTCGTCGCAGTCGGCTTCGTCGTCGACGATGCGATTGTCATGCTGGAAAACATCACCCGTCATATCGAGGACGGAATGCAGCCCAACGAGGCCGCGAGAAAAGGCGCCGGCGAGATCGGCTTTACCATCATCTCAATCAGCCTTTCCCTGATTGCCGTTCTCATCCCCATTCTCCTGATGGGCGGTATCGTCGGGCGGCTCTTTCGCGAGTTCGCCGTCACCCTTACGATCGCTATTGCGATCTCGGCGTTTGTGTCGCTGACGCTGACCCCGATGTTGGCATCGCGTTTCATACGCGCTACTCCCACACAGAATCGCGGCCGCTTCTATCGAACCGGAGAAGCGTTCTTTGACTGGCTTCTATCTCTCTATGCGCGCAGCCTCACCCCCGTCATTCGCCATCGCTATCTGACACTCTTGGTTTTCCTGGGCACGGTCGCGCTGACCGGTTATCTCTTTGCGATCGCACCAAAGGGCTTCTTTCCAGAACAGGATACCGGCTTCATTGCCGGACTGTCTCAGGCGTCGCCAGATATCTCCTTTAGCGAAATGGCAAAGCTGCAGGAGCGTGTCAGCGCGATCATCCTTAAGGATCCAGCCGTCTATAGCGTCTTCATGGATATCGGTGGCGGCAATGGCGGTAACGCCCTCAATCAGGGACATATCAACATCACACTGAAACCTCTATCCGAGCGCGATGTCAGCGCAAAGGAGGTCATTCAGCGCCTCGGCGACGCCCTGAATGCGCAGCAAGGCATCAAGCTGTTCATGCAGTCGGCGCAAGACATCAATATCGGAGCCCGCCCGGCCAAGACGCAATATCAATATACGCTCCAGGATGGCGATATCACCGAACTTGCCAACTGGTCCTCGAAAGTCACAAACCGGCTGCAAGCTCTACCCGAACTTCGCGATGTCGGCAGCGATCAGCAAGCCGAGGCGCCGAACCTGTCCATCCGCATCGATCGCGCCGCTGCCACCCTGTACGGGGTCTTGCCTTCCGCGATCGACGAGACGCTCTATGACGCTTTCGGCCAACGCCAAGTGGCGTCCTATTCGACGCAGACCGACACGTTCCATGTCATCCTGGAGGTGTTGCCAAACCTGCAGCGCGACATAGCGACCCTGGACCGCCTTTCGGTGAGGGCAAGCAATGGAACGCTTGTTCCATTGCCAGTCGTTGCCAAGTGGACAACGAATGGCGTCTCGCCAGTGTCGATCTCGCATCAGGGACAATCGCCGGCCGTCACCATTTCCTTTAACCTTGCCCCCTCGATTGCCCTGGGTCAGGCAACAAGCGCGATCGAGAATGCCGTGGCCGCCTTGCATCCTCCCGCTTCGCTGCAGGCCAGCTTCTCGGGCAGCGCCAAGGCCTTTCAGGATTCGCTGGCGACCGTGCCTATGCTGATCCTTGCATCGCTTGTCGTGGTCTACATTATTCTCGGCATCCTCTACGAAAGCCTGATTCACCCGTTGACGATCCTGTCAACACTGCCGTCTGCGGCGCTTGGCGCGCTTCTGGCGTTGCAGTTTGCCGGCCTTGATTTCGGGCTTGTCGCGATGATCGCCGTCATCCTGCTCATCGGCATCGTCAAGAAGAACGGGATCATGCTCGTCGACTTCGCGATTCAGGCGGAGAAGGAGGAGGGATTGAGCAGCGAGGCCGCGATCGTCAGGGCAGCGCACATGCGCTTTCGTCCGATTTTGATGACCACGATGGCTGCTCTTTTGGGAGGGTTGCCGCTGGCGATCGGTCATGGCTCCGGCTCGGAGCTGCGTCAACCGCTGGGTTACGCCATTGTTGGCGGCCTTTTGGTCAGCCAGTTGCTGACCCTATATACCACGCCGGTCATTTATCTTCTTCTCGACAAATTGCGGCGGCCGAGAACAAGCGATCACACGACGGTACGCCGGGGCGGTGACGTAGCTACAGTTTGA
PROTEIN sequence
Length: 1052
MTAGSGHDRDQSDTSSFFNFFIDHPVATGLIMLGIFLVGAICYPFMPVSALPQIDFPTVQIAASLPGASPDTMASSVAQPIEEALSRVSGITEMTSTSSLGTASITVQFDLGEDIQTAASDVQTAISEASSQLPKDMPSLPTVRKVNPADAPIMQLSANSDSLTLPELDEYIERNIATKIGQVSGVAYVNIGGKQKPAIRIAVDPGRLAQADVTLEDLRSAIGNLSLSAPKGNIDDPTRTFPIDTNDQITTTTEWNDAVIAYRNGGPVRIRDIGQAVDGAEDAKMAHWTNGERGIALDVFRQPGANVIAVVDAVKSQLPALQASLPRSITLKLVTDRTTTIRASVDDVQFTLVLTIGLVVLVIFLFLRSIRATIIPVLTLPIALVGSLAPMWVLGFSLDNLSLMALVVAVGFVVDDAIVMLENITRHIEDGMQPNEAARKGAGEIGFTIISISLSLIAVLIPILLMGGIVGRLFREFAVTLTIAIAISAFVSLTLTPMLASRFIRATPTQNRGRFYRTGEAFFDWLLSLYARSLTPVIRHRYLTLLVFLGTVALTGYLFAIAPKGFFPEQDTGFIAGLSQASPDISFSEMAKLQERVSAIILKDPAVYSVFMDIGGGNGGNALNQGHINITLKPLSERDVSAKEVIQRLGDALNAQQGIKLFMQSAQDINIGARPAKTQYQYTLQDGDITELANWSSKVTNRLQALPELRDVGSDQQAEAPNLSIRIDRAAATLYGVLPSAIDETLYDAFGQRQVASYSTQTDTFHVILEVLPNLQRDIATLDRLSVRASNGTLVPLPVVAKWTTNGVSPVSISHQGQSPAVTISFNLAPSIALGQATSAIENAVAALHPPASLQASFSGSAKAFQDSLATVPMLILASLVVVYIILGILYESLIHPLTILSTLPSAALGALLALQFAGLDFGLVAMIAVILLIGIVKKNGIMLVDFAIQAEKEEGLSSEAAIVRAAHMRFRPILMTTMAALLGGLPLAIGHGSGSELRQPLGYAIVGGLLVSQLLTLYTTPVIYLLLDKLRRPRTSDHTTVRRGGDVATV*