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SCNpilot_cont_500_bf_scaffold_856_23

Organism: SCNPILOT_CONT_300_BF_Mesorhizobium_65_39

near complete RP 48 / 55 MC: 3 BSCG 48 / 51 ASCG 11 / 38 MC: 1
Location: comp(19298..19882)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhizobium loti RepID=UPI00037D814E similarity UNIREF
DB: UNIREF100
  • Identity: 80.9
  • Coverage: 173.0
  • Bit_score: 280
  • Evalue 1.60e-72
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 80.9
  • Coverage: 173.0
  • Bit_score: 279
  • Evalue 6.60e-73
RNA polymerase sigma factor {ECO:0000313|EMBL:ESY90920.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.0
  • Coverage: 172.0
  • Bit_score: 279
  • Evalue 3.00e-72

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Taxonomy

Mesorhizobium sp. LNHC229A00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
TTGAACGAGACGAGCGCCCGGGCCGGCGGTTCCCCGCCGGCCGGTGACGGACTGGCGCGGGCCGACCGCTTCAGCCAGGTGGTGCTGCCGTATCTCGCGGACGCGCTGTCCCTGGCGCGCTGGTTGACGGGCAATGCCGCCGATGCCGAGGACGTGGTCCAGGAGGCCTGCATCAAGGCGCATGCCGGCATCGCCGGCTATGCCGGCGGCAATGCCAGGGCCTGGCTGCTGACCATCGTGCGCAACACCGCCTATTCGTGGATGGCGCGCAACCGCCCGCGCGCGGTGATGGCCGTCGGCGATCTAGCCGACCTCGACGAGGTGACGGCGGTGCACGGCGGCGTGGTCGACATGGGTGAGGGACCGGAGGCCGGGCTGATCGCCAGGGCCAATGCCGCGGCGCTCGAGGCGGCAATCGCGGCGCTGCCACAACCATTTCGCGAGACGCTGGTGCTGCGCGACATAAACGGCCTCAGCTATCGCGAGATATCGGACATGCTCACCGTGCCGATCGGCACGGTAATGTCGCGGCTGGCCCGCGCGCGCGGCCTGCTGATGTCGGAACTTGGAGAACGCCATGCATGA
PROTEIN sequence
Length: 195
LNETSARAGGSPPAGDGLARADRFSQVVLPYLADALSLARWLTGNAADAEDVVQEACIKAHAGIAGYAGGNARAWLLTIVRNTAYSWMARNRPRAVMAVGDLADLDEVTAVHGGVVDMGEGPEAGLIARANAAALEAAIAALPQPFRETLVLRDINGLSYREISDMLTVPIGTVMSRLARARGLLMSELGERHA*