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SCNpilot_cont_500_bf_scaffold_1577_1

Organism: SCNPILOT_CONT_300_BF_Pseudonocardia_72_23

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: 1..1548

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.3
  • Coverage: 518.0
  • Bit_score: 783
  • Evalue 1.70e-223
Transcription termination factor Rho n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ53_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 79.3
  • Coverage: 518.0
  • Bit_score: 783
  • Evalue 1.20e-223
  • rbh
transcription termination factor Rho; K03628 transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 79.3
  • Coverage: 518.0
  • Bit_score: 783
  • Evalue 3.70e-224
  • rbh

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Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1548
CGCAACGGTGGCGAGAACCGCAACGGTGGCGAGAACCGCAACGGTGGCGAGAACCGCAACGGTGGCGAGAACCGCAACGACGGTGCCCGCAACGACCGGGGCAACGGCCGCAACGGTGGCGATACCCGCAACCAGGACGGCAACCGCAACGGCGGCGGCGACCGCAACGGGGGCGGCGACAACCGCACCCAGGACCGCAACCAGGACGCCAACCGCAACCAGGACGCGAACCGGGGCCCCCGCGACAACCGCCCGGACGACGACGGTGACGAGGAGGGCGGTGGCCGTCGTGGCCGCCGCTTCCGTGACCGTCGCCGCGGCCGGGACCGGGGCGACCGTGCGGCCGGTGGCGGTCAGGGCAACGGTGGCCAGGGCAACGTCGACACCGAGGTGCGCGACGGCGACGTCCTGCTCCCCGTCGCCGGCATCATCGACGTGCTGGACAACTACGCGTTCGTCCGCACGACCGGCTACCTGTCCGGGCCCACCGACGTCTACGTGTCGCTGTCGGTCGTGCGCAAGTACGGCCTGCGTCGCGGTGACGCCATCACCGGTGCGGTGCGCGAGCCCCGCGAGGGCGAGCAGTCGCGCCAGAAGTTCAACCCGCTGGTGCGCGTCGACTCGATCAACGGCCAGGACCCCGAGACGCTGAAGAACCGTCCGGAGTTCACCAAGCTCACGCCGCTCTACCCCAATGAGCGCCTTCGTCTGGAGACCGAGCCGAGCAAGCTCACCACGCGCGTGATCGACCTGGTCATGCCGATCGGCAAGGGGCAGCGTGCGCTGATCGTGTCGCCGCCCAAGGCCGGCAAGACCATGATCATGCAGTCGATCGCCAACGCGATCACCACGAACAACCCCGAATGCCACCTCATGGTCGTCCTCGTGGACGAGCGGCCGGAGGAGGTCACCGACATGCAGCGGTCGGTGAAGGGCGAGGTCATCGCGTCCACGTTCGACCGCCCGCCGTCGGACCACACCACGGTCGCCGAGCTGGCCATCGAGCGCGCGAAGCGCCTGGTCGAGATGGGCCACGACGTCGTCGTGCTGCTCGACTCGATCACGCGGCTGGGCCGGGCCTACAACCTGGCCGCGCCCGCGTCGGGCCGGATCCTCTCCGGTGGTGTCGACTCCACGGCGCTCTACCCGCCGAAGCGCTTCCTCGGCGCCGCGCGCAACATCGAGGACGGGGGCTCGCTCACCATCTTCGCCACGGCGCTCGTGGAGACCGGGTCCACGATGGACACGGTGATCTTCGAGGAGTTCAAGGGCACCGGCAACGCCGAGCTGAAGCTGGACCGCAAGATCGCCGACAAGCGGGTCTTCCCCGCCATCGACATCGACGCGTCCGGCACCCGCAAGGAGGAGCTGCTGCTCTCGCCCGACGAGCTGGCGGTCACCGTCAAGCTCCGCCGGGTGCTCGCGGCCCTCGACGACCAGCAGGCCCTCGACCTGGTGCTGGGTCAGCTCAAGAAGACCCGCACCAACATCGAGTTCCTCATGCAGGTGGCGAAGAACTCGCCGGGCACCACCGGTACCGAGGACTGA
PROTEIN sequence
Length: 516
RNGGENRNGGENRNGGENRNGGENRNDGARNDRGNGRNGGDTRNQDGNRNGGGDRNGGGDNRTQDRNQDANRNQDANRGPRDNRPDDDGDEEGGGRRGRRFRDRRRGRDRGDRAAGGGQGNGGQGNVDTEVRDGDVLLPVAGIIDVLDNYAFVRTTGYLSGPTDVYVSLSVVRKYGLRRGDAITGAVREPREGEQSRQKFNPLVRVDSINGQDPETLKNRPEFTKLTPLYPNERLRLETEPSKLTTRVIDLVMPIGKGQRALIVSPPKAGKTMIMQSIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFLGAARNIEDGGSLTIFATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKRVFPAIDIDASGTRKEELLLSPDELAVTVKLRRVLAALDDQQALDLVLGQLKKTRTNIEFLMQVAKNSPGTTGTED*