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SCNpilot_cont_500_bf_scaffold_1649_22

Organism: SCNPILOT_CONT_300_BF_Pseudonocardia_72_23

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: 23628..24776

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor containing a TPR repeat domain n=1 Tax=Saccharomonospora xinjiangensis XJ-54 RepID=I0V8B6_9PSEU similarity UNIREF
DB: UNIREF100
  • Identity: 83.8
  • Coverage: 382.0
  • Bit_score: 616
  • Evalue 2.40e-173
  • rbh
Putative RNA polymerase sigma factor containing a TPR repeat domain {ECO:0000313|EMBL:EID56369.1}; Flags: Precursor;; TaxID=882086 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora xinjiangensis XJ-54.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.8
  • Coverage: 382.0
  • Bit_score: 616
  • Evalue 3.40e-173
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 79.4
  • Coverage: 379.0
  • Bit_score: 584
  • Evalue 1.90e-164
  • rbh

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Taxonomy

Saccharomonospora xinjiangensis → Saccharomonospora → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1149
GTGATCGACGAGCTGCTGCTGCGGGAGCTGACGCCCGCGGTGACCGGCGTCCTCGTGCGTCGCGGGGTGGACTTCGCGACGGCCGAGGACGCCGTGCAGGAGGCGCTCCTCCAGGCCACGCGGACGTGGGCGGAGCAGCAGCCGGCCGACCCGAAGGGTTGGCTGGTCACGGTGGCCTGGCGCAAGTTCCTCGACGCCCACCGCGCCGAGACCTCGCGCCGGCACCGGGAGGAGCGGGTCGAGACCGAGCCGCCGCCCGGGCCCACCGAGAGCGCGGACGACACGTTGGCTCTGTTCTTCCTGTGCGCCCACCCGTCGCTGACGCCGGCATCCGCGGTGGCGCTCACGCTGCGCGCCGTCGGCGGGCTGACCACCCGGCAGATCGCCGCCGCCTACCTCGTGCCGGAGGCGACGATGGCGCAGCGGATCAGCCGGGCCAAGCGGACGGTCGCCGACGTGCGGTTCGACCAGCCGGGCGATCCGGCGACCGTGCTCCGCGTGCTCTACCTGGTCTTCAACGAGGGGTACACCGGCGACGTCGACCTGGCGGCCGAGGCGATCCGGCTCGCCCGGCAGCTGGCGTCGGTGACCCGGGACGAGGAGACCGCCGGGCTGCTGGCGTTGATGCTGCTGCACCACGCCCGCCGCCCGGCCCGGACCCGCGACGACGGCAGCCTCGTTCCCCTGGCCGGGCAGGACCGCTCCCGCTGGGACACCGCGCTCATCGCCGAGGGCGTCGCGATCCTGCAGGCGGCGCTGGCCCGCGACCGGCTCGGCGAGTACCAGGCCCAGGCCGCCATCGCCGCGCTGCACGCCGACGCGCCGCGCGCCGAGGAGACCGACTGGGCGCAGATCGTCGGCTGGTACGACGAGCTGCTGAGGCTCACCGGGAGCCCGGTGGTCGCGCTCAACCGGGCCGTCGCGGTCGGCGAGGCCGACGGCCCGTCGGCCGGGCTCGCGGCCCTGGCCGAGGTGGACCCCGGACTGCCCCGCCACACCGCCGCCTCGGCGTATCTCCACGAGAAGGCCGGAGACCTGCCGGTCGCCGCCCGGCTGTACGCCGACGCGGCGCGGTCCGCGCCCAACCTCGCCGAGCGCCGCCACCTCACCCGGCAGGCGGCGCGGATCAGCCAGCAGATCAGCCGGTGA
PROTEIN sequence
Length: 383
VIDELLLRELTPAVTGVLVRRGVDFATAEDAVQEALLQATRTWAEQQPADPKGWLVTVAWRKFLDAHRAETSRRHREERVETEPPPGPTESADDTLALFFLCAHPSLTPASAVALTLRAVGGLTTRQIAAAYLVPEATMAQRISRAKRTVADVRFDQPGDPATVLRVLYLVFNEGYTGDVDLAAEAIRLARQLASVTRDEETAGLLALMLLHHARRPARTRDDGSLVPLAGQDRSRWDTALIAEGVAILQAALARDRLGEYQAQAAIAALHADAPRAEETDWAQIVGWYDELLRLTGSPVVALNRAVAVGEADGPSAGLAALAEVDPGLPRHTAASAYLHEKAGDLPVAARLYADAARSAPNLAERRHLTRQAARISQQISR*