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SCNpilot_cont_500_bf_scaffold_1530_24

Organism: SCNPILOT_CONT_300_BF_Alphaproteobacteria_65_35

near complete RP 45 / 55 BSCG 44 / 51 MC: 2 ASCG 10 / 38 MC: 1
Location: 19727..20260

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RIMM_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 48.0
  • Coverage: 177.0
  • Bit_score: 171
  • Evalue 9.70e-40
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 48.0
  • Coverage: 177.0
  • Bit_score: 171
  • Evalue 3.00e-40
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 85.4
  • Coverage: 178.0
  • Bit_score: 304
  • Evalue 1.00e-79

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Taxonomy

R_Alphaproteobacteria_66_14 → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 534
ATGAAGGACGGCCGCGTCCTGCTGGGCGTCGTCGCGGCGCCGCACGGCGTACGCGGCCTGGTGCGCATCAGGAGCTTCACCGAGGATCCGATGGATATCGCCGCCTACGGCGAGCTATCGGACGAAACGGGGAAGAAGCGGTTCCGGGTCGAGGCTCTGAGCGCCGTCAAAGGCGCAGTCCTCGCCCGGCTGGAGGGCGTAGCCGATCGAACGGCGGCCGAGGCAGTACGGGGCTTGCGGCTCTATGTGGAGCGCGAGCGTCTGCCGGCGACGGGCGAGCGGGAGTGGTACGAGGCGGACCTGATCGGTCTCGCCGCGGTCGGCCGGGACGGCCGGGATTGGGGGAAGGTGATGGCCTTCCACGATTTCGGCGCCGGGTCGACGATGGAAGTGTCGGGAGGCAGCGCATCGAGGCATTCGGTGATGTTGCCCTTCACCGACGAGGCCGTGCCCGAGATCGATGTCCCGGGCGGCAAGATTGTGGTCGATCCACCGGCAGGAATCCTGTCCGGCGGGTCAGCGAAGGAGGCATGA
PROTEIN sequence
Length: 178
MKDGRVLLGVVAAPHGVRGLVRIRSFTEDPMDIAAYGELSDETGKKRFRVEALSAVKGAVLARLEGVADRTAAEAVRGLRLYVERERLPATGEREWYEADLIGLAAVGRDGRDWGKVMAFHDFGAGSTMEVSGGSASRHSVMLPFTDEAVPEIDVPGGKIVVDPPAGILSGGSAKEA*