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SCNpilot_cont_500_bf_scaffold_6999_4

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

partial RP 32 / 55 MC: 2 BSCG 34 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: 4073..4663

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-E factor protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CPN5_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 70.4
  • Coverage: 179.0
  • Bit_score: 240
  • Evalue 1.10e-60
RNA polymerase sigma factor {ECO:0000313|EMBL:EOA02068.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.3
  • Coverage: 179.0
  • Bit_score: 240
  • Evalue 1.50e-60
rpoE; RNA polymerase sigma-E factor protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 69.8
  • Coverage: 179.0
  • Bit_score: 237
  • Evalue 2.90e-60

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Taxonomy

Herbaspirillum frisingense → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 591
ATGACCGCCGCCATCTCCACCACGGGGGCCGGATCTGCAGCCATGGCCGATCCGGTCGAGTCTGCGCTGCGCGTGCTGTTCGAAGCCGGCCTGGGAGGCGATCCCGACGCCTATCGGTGCTTCCTGGATGAACTGAGCGCACGCCTGCGTGCCTTCCTGCGGCGCCGGCTGGGTGGGTCGCCGGATGACGTCGAGGACATCCTGCAGGAGACCCTGCTGGCCATCCACAACAGCCGCCACACCTACCGCAGCGGCCAGCCGCTGACTGCGTGGGTCTATGCCATCGCCCGCTACAAGCTCATGGACTTCCATCGCAGTCACCACCGGCGCGAAGCGCTGAACCTGCCGCTGGAGGCGGCGCAGGACGTGTTCGCGGCCGCCGACACCGAATCGACCCACGCCCGGCACGATATCGGCCAGCTGCTGGAGGCGCTGCCGGACCGGCATCGCCTGCCGATCCTGCACGTCAAGCTCGGCGGCCTGTCGGTCAGCGAAACCGCACGCCTGACCGGCATGTCCGAGTCGGCGGTGAAAGTAGGCATCCACCGCGGCCTGAAGGCGCTGGCCTTGAAAATACGGAGTGCAGCATGA
PROTEIN sequence
Length: 197
MTAAISTTGAGSAAMADPVESALRVLFEAGLGGDPDAYRCFLDELSARLRAFLRRRLGGSPDDVEDILQETLLAIHNSRHTYRSGQPLTAWVYAIARYKLMDFHRSHHRREALNLPLEAAQDVFAAADTESTHARHDIGQLLEALPDRHRLPILHVKLGGLSVSETARLTGMSESAVKVGIHRGLKALALKIRSAA*