ggKbase home page

SCNpilot_cont_500_bf_scaffold_13443_3

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

partial RP 32 / 55 MC: 2 BSCG 34 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(1418..2125)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.2
  • Coverage: 232.0
  • Bit_score: 389
  • Evalue 2.50e-105
rsuA; ribosomal small subunit pseudouridylate synthase; K06183 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] similarity KEGG
DB: KEGG
  • Identity: 80.6
  • Coverage: 232.0
  • Bit_score: 386
  • Evalue 4.70e-105
  • rbh
pseudouridine synthase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003AAB721 similarity UNIREF
DB: UNIREF100
  • Identity: 81.2
  • Coverage: 234.0
  • Bit_score: 390
  • Evalue 1.00e-105
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Stenotrophomonas sp. RIT309 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 708
ATGAAGCTGGTCAAGCACATCGCCAACCTTGGTTACGGCAGCCGCAAGCAGGTGCAGTGGCTGTTCCGCGAGGGCCGCGTCACCGATGCCGACGGGCAGGTGCTGTACGCCGACGACAAGGTCGGGCACGACGCCATCCGCGTCGATGGCGAGCCGCTGGACCCGCCGCCGGGATTGACCCTGGTGCTGCACAAGCCGGCCGGCTACACCTGCTCGACCAAGGACCAGGGCCGGCTGGTCTACGACCTGCTGCCGCCGCGCTTCCGCGACCGCTCGCCGCTGCTGTCCACCGTCGGGCGCCTGGACCGCGACACCAGCGGGCTGTTGTTGATGACCGACGACGGCGCCCTGCTGCACCGGATCGTGTCGCCGAAGTCGAAGCTGGACAAGGTCTACGAGGCGCGGCTGGCCCAGGACCTGCGCGGCGACGAGGCGGCACGCTTCGCCAGCGGCACGCTGTTGCTGGAATCGGACGACAAGCCGCTGCTGCCGGCCGAACTCGAGGTGCTCGGCCCGCGCCATGCGCGGCTGACCCTGCACGAGGGCCGCTACCACCAGGTGCGGCGCATGTTCGCCGCGGTCGGCAACCACGTCGACGCCCTGCACCGCAGCCGCATCGGTGGGCTGGCGCTGGATGACCTGGCCGAAGGACAGTGGCGGGTGCTGTCGGCGGATGACCTGCAGGTCCTGTTCGGGGACCGGCCATGA
PROTEIN sequence
Length: 236
MKLVKHIANLGYGSRKQVQWLFREGRVTDADGQVLYADDKVGHDAIRVDGEPLDPPPGLTLVLHKPAGYTCSTKDQGRLVYDLLPPRFRDRSPLLSTVGRLDRDTSGLLLMTDDGALLHRIVSPKSKLDKVYEARLAQDLRGDEAARFASGTLLLESDDKPLLPAELEVLGPRHARLTLHEGRYHQVRRMFAAVGNHVDALHRSRIGGLALDDLAEGQWRVLSADDLQVLFGDRP*