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SCNpilot_cont_500_bf_scaffold_54703_2

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

partial RP 32 / 55 MC: 2 BSCG 34 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(1042..1215)

Top 3 Functional Annotations

Value Algorithm Source
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 57.0
  • Bit_score: 115
  • Evalue 6.40e-24
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 57.0
  • Bit_score: 115
  • Evalue 2.90e-23
DNA-directed RNA polymerase subunit beta n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JZ36_STEMA similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 57.0
  • Bit_score: 115
  • Evalue 2.10e-23

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Taxonomy

Stenotrophomonas sp. SKA14 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 174
ACCCTGCAGGAAATGCTGACGGTGAAGTCCGACGACGTGCAGGGCCGCAACCAGATGTACAAGAACATCGTCGACGGCGAGCACGAGATGGTCGCGGGCATGCCGGAATCCTTCAACGTGCTGGTGAAGGAAATCCGCTCCCTGGCCATCAACATGGAACTGGAAGACAACTGA
PROTEIN sequence
Length: 58
TLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINMELEDN*