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SCNpilot_cont_500_bf_scaffold_10555_3

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_63_7

partial RP 38 / 55 MC: 2 BSCG 37 / 51 MC: 3 ASCG 10 / 38 MC: 2
Location: comp(910..4281)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.1
  • Coverage: 999.99
  • Bit_score: 1957
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZP8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 87.1
  • Coverage: 999.99
  • Bit_score: 1957
  • Evalue 0.0
mfd; transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 87.1
  • Coverage: 999.99
  • Bit_score: 1956
  • Evalue 0.0

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Taxonomy

Rhizobium freirei → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3372
TCGGACGGCCAGCGCATGGCCGATATCGAGCAGATGCTGGGTTTTGCCGCGCCCGATATTCCGGTCATGACGCTGCCGGCCTGGGACTGTTTGCCCTATGACCGCGTCTCGCCCAGCGCCGATGTCTCCGCGCGCCGGCTGGCGGCGCTCTCCGGCCTGATCGCCTATGCGAAGAAACCGCATCCGGCGATCCTGCTGATCACCGTCAACGCGATGCTGCAGAAGATCGCGCCGCGCGAGATCATCGAAAGCCTCGCCTTCTCCGCAAAGCCCGGCCAGACGATCCGCATGGACGATATCGCCGCACGGCTGGAGCGCAACGGCTTCGACCGGGTCGCCACCGTGCGCGAGGTCGGGGAATTCGCCGTGCGCGGCGGCATTCTCGATGTCTTCGTGCCGGGCACGGAGGAGCCGGTGCGCCTCGATTTCTTCGGCGATTCGCTTGAAACAATCCGCACCTTCGATCCCGCCAGCCAGCGCACCACCGGCCAGGCCCGCTCGCTCGATCTCAACCCGATGAGCGAGGTGACGCTGACGCCGGACACGATCAGCCGTTTCCGCAAGAATTACCTGTCGCTGTTCGGCGCGGCAACCCGCGACGACGCGCTGTATGTCGCCGTCTCCGAGGGCCGCCGTTATGCCGGCATGGAGCATTGGCTGCCGCTGTTCTACGAAAAGCTGGAAACCGCCTTCGATTACCTCAAAGGCTTCCTGATCGTCACCGACCATACGGTGCGGGAGGCGGCGGAAGAGCGCTCCAAGCTGGTGCTCGATTATTTCGAGGCGCGGCAAAATTCCGGCCATCAGGGCAAGGGCCAGATGGCGCAGGGCACGCCCTACAAGCCGGTCTCCCCCGGCCAGCTCTATCTCGACGCGAAGGCGTTCGGCAAAACGCTGGATATGTTCGCGGCGATCCGCCTCTCGCCCTTCAACGAGATGGAAGGCGTCGACCGCAAGGTCGTCACCATCGACGCCCATGCCGGCCCGCGCTGGGCCAAGACCGCGAGCGAGTCGGAAAGCGGCGAGCGCATCAATGTCTTCGATCTCGCCGTCAAGCATATCGGCGAGCGCCGCGCCAAGGGCCGCAAGGTGCTGATCTCGGGCTGGTCGGAAGGCTCGCTCGACCGGTTGCTGCAGGTGCTGAACGAGCACGGGCTGGAGCGCATCAAGCCTGTCAAGGCGCTGAAGGACTTGTCCAAGCTCGACAAGGGCGAGGCGGCCTCGACGGTTCTCAGCATCGAATCCGGCTTCGAGGCCGGCGATCTCGTCGTCATCGGCGAGCAGGATATTCTCGGCGACCGCATGGTGCGTCGCGCCAAGCGCCGCAAGCGCGGGGCGGATTTCATCGCCGAAGTCGCAGGTCTGGACGAAGGCTCCATCGTCGTCCATGCCGAGCACGGCATCGGCCGCTTCATCGGCCTGAAAACCATCGAGGCGGCGGGTGCCCCCCACGCCTGCCTTGAGCTGTTATATGCCGACGACGCCAAACTGTTCCTGCCGGTCGAAAACATCGACCTGCTGTCGCGCTACGGCGGCGAGGGCACCGAGGTGCAGCTCGACAAACTCGGCGGCGGCGCATGGCAGATGCGCAAGGCCAAGCTCAAGAAAAAGCTGCTGGATATGGCCGACGGCCTGATCCGCATCGCCGCCGAGCGCATGATGCGCCATGCGCCGGTGCTGACCGCGCCGGATGGGCTCTATGACGAATTCGCCGCCCGCTTCCCCTATGACGAGACCGACGACCAGATGACCGCCATCGATTCGGTGCGCGACGATCTCGGCGCGGGACGGCCGATGGATCGCCTCGTCTGCGGCGATGTCGGCTTCGGCAAGACGGAAGTGGCGCTGCGCGCCGCCTTCGTCGCCGCCATGAACGGCGTGCAGGTGGCGGTCGTCGTGCCGACGACGCTGCTCGCCCGCCAGCATTTCAAAACCTTTTCGGAGCGCCTGCGTGGCTTCCCGATCCGCATCGCGCAGGCCTCGCGCCTCGTCGGCTCCAAGGAGTTGTCGCAGACCAAGAAGGAAGTGGCCGATGGCAAGGTGGATGTGGTGGTCGGCACCCATGCGCTGCTCGGCTCCGGCATCAACTTCGCCAATCTTGGCCTCTTGATCATCGACGAGGAGCAGCATTTCGGCGTCAAGCACAAGGAACGGCTGAAGGAGCTGAAGAGCGACGTTCATGTGTTGACGCTCTCGGCGACGCCGATCCCGCGCACCCTGCAACTGGCGATGACCGGCGTGCGCGAATTGTCGCTGATCACCACGCCGCCGGTGGACCGCATGGCGGTGCGCACCTTCATCTCGCCCTTCGATCCGCTTGTGATCCGCGAGACGCTGATGCGCGAGCATTATCGCGGCGGCCAAAGCTTCTATGTCTGCCCGCGCCTGTCGGATCTGGCCGATATCCAGGCCTTCCTGCAATCGGATGTGCCGGAGCTGAAGGTCGCCATCGCCCATGGCCAGATGGCGGCGGGCGAGCTGGAAGACATCATGAATGCCTTCTACGACGGCAAATACGACGTGCTGCTCTCGACCACCATCGTCGAATCCGGCCTCGACGTTCCCACAGCCAATACGCTGATCGTCCACCGCGCCGATATGTTCGGCCTCGCACAGCTTTACCAGATCCGCGGCCGCGTCGGCCGTTCCAAGGTGCGCGCCTTCGCGCTTCTGACGCTGCCGGTCAACAAGGTGCTGACCACGGGTGCCGAACGGCGCCTCAAGGTGCTGCAATCGCTGGATACGCTGGGCGCCGGCTTCCAGCTCGCCAGCCACGACCTCGACATCCGCGGCGCCGGCAACCTGCTCGGCGAAGAGCAATCCGGCCATATCAAGGAAGTCGGCTTCGAGCTTTACCAGCAGATGCTGGAGGAGGCGGTGGCCGAGGTGAAGGGCGACGACGACATCGTCGACAGCGGCTGGTCGCCGCAGATCTCGGTGGGCACGCCGGTGATGATCCCGGACGACTACGTGCCCGACCTGCACCTGCGCATGGGCCTCTATCGCCGCCTCGGCGAAATCACCGAACTGCGCGATATCGACGGTTTTGGCGCGGAGATGATCGACCGTTTCGGGCCGCTGCCCATCGAAGTGCAGCACCTCCTGAAGATCGTCTACGTCAAGTCGCTGTGCCGCAAGGCCAATGTCGAGAAGCTGGAGGCCGGGCCGAAGGGCGTCGTCGTGCAGTTCCGCAACCGCGAATTCCCCGATCCGGCGGCATTGGTCGGCTATATCGCCAAGCAGGGAACGATGGCGAAGATCCGCCCCGATCACAGCGTCTTCCTCAGCCGCGACCTGCCGACGCCGGAAAAGCGGCTGGCGGGTGCTGCCATGGTCATGACCCAGCTTGCGGGGCTTCTCGACAAAAAGTGA
PROTEIN sequence
Length: 1124
SDGQRMADIEQMLGFAAPDIPVMTLPAWDCLPYDRVSPSADVSARRLAALSGLIAYAKKPHPAILLITVNAMLQKIAPREIIESLAFSAKPGQTIRMDDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDSLETIRTFDPASQRTTGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFGAATRDDALYVAVSEGRRYAGMEHWLPLFYEKLETAFDYLKGFLIVTDHTVREAAEERSKLVLDYFEARQNSGHQGKGQMAQGTPYKPVSPGQLYLDAKAFGKTLDMFAAIRLSPFNEMEGVDRKVVTIDAHAGPRWAKTASESESGERINVFDLAVKHIGERRAKGRKVLISGWSEGSLDRLLQVLNEHGLERIKPVKALKDLSKLDKGEAASTVLSIESGFEAGDLVVIGEQDILGDRMVRRAKRRKRGADFIAEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELLYADDAKLFLPVENIDLLSRYGGEGTEVQLDKLGGGAWQMRKAKLKKKLLDMADGLIRIAAERMMRHAPVLTAPDGLYDEFAARFPYDETDDQMTAIDSVRDDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERLRGFPIRIAQASRLVGSKELSQTKKEVADGKVDVVVGTHALLGSGINFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLSDLADIQAFLQSDVPELKVAIAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQIRGRVGRSKVRAFALLTLPVNKVLTTGAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDDDIVDSGWSPQISVGTPVMIPDDYVPDLHLRMGLYRRLGEITELRDIDGFGAEMIDRFGPLPIEVQHLLKIVYVKSLCRKANVEKLEAGPKGVVVQFRNREFPDPAALVGYIAKQGTMAKIRPDHSVFLSRDLPTPEKRLAGAAMVMTQLAGLLDKK*