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SCNpilot_cont_500_bf_scaffold_55647_1

Organism: SCNpilot_P_inoc_Microbacterium_69_20

partial RP 22 / 55 BSCG 28 / 51 ASCG 6 / 38 MC: 1
Location: comp(3..515)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GVU6_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 45.0
  • Coverage: 149.0
  • Bit_score: 97
  • Evalue 1.30e-17
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.8
  • Coverage: 172.0
  • Bit_score: 100
  • Evalue 2.20e-18
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 44.6
  • Coverage: 130.0
  • Bit_score: 86
  • Evalue 1.20e-14

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Taxonomy

Microbacterium sp. C448 → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 513
ATGCCCGGGAAGACGCAGGACTTGACAAGGGTCTTACTAGTGTCCGAAACCCCGACGGCTCCCGTCGGTGAAAGGCGAGACGTGACTTCCGTTACGAAGACCCCCCGTACACGCAAGGCAGACGACACCGACGTGGTCGACCAGGCCGCAACCGAGACCGCTGTGCAGACGCCCGCGGCGGATGCCAAGGCGCCGGCGAAGAAGGCCCCCGCGAAGAAGGCGCCCGCGAAGAGCGCTGCGGCGAAGGCTCCCGCGGCCAAGACCGCTGCGGCGAAGACCACCGCCGCCAAGACCACCGCCAAGAAGGCATCCGGCAAGGCATCCGACGCTGACGAAGAAGAGCTGGACGACGACGTCGAACTCGAGGACGACGGCGAAGACGTCGACGCCGACGAGACCGACGACGACGACACCGAGTCTGACGAGACTGCGCCCGCGAAGAAGGATGCCAAGGGCGCCGCTGACGACGAGGAAGACGACGAAGACGAGGAAGGCCAGACCAAGCCTGCCTTC
PROTEIN sequence
Length: 171
MPGKTQDLTRVLLVSETPTAPVGERRDVTSVTKTPRTRKADDTDVVDQAATETAVQTPAADAKAPAKKAPAKKAPAKSAAAKAPAAKTAAAKTTAAKTTAKKASGKASDADEEELDDDVELEDDGEDVDADETDDDDTESDETAPAKKDAKGAADDEEDDEDEEGQTKPAF