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SCNpilot_cont_500_bf_scaffold_11277_5

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

partial RP 5 / 55 BSCG 13 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: 3270..5057

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretion system protein VirD4 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKL6_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 52.8
  • Coverage: 580.0
  • Bit_score: 577
  • Evalue 1.50e-161
  • rbh
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:EIL87757.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.8
  • Coverage: 580.0
  • Bit_score: 577
  • Evalue 2.10e-161
putative NTPase VagA; K03205 type IV secretion system protein VirD4 similarity KEGG
DB: KEGG
  • Identity: 45.7
  • Coverage: 560.0
  • Bit_score: 488
  • Evalue 2.90e-135
  • rbh

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Taxonomy

Rhodanobacter fulvus → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1788
ATGGGTGTCTTGCGAACCAGGGTTGCGGGAGTCGTCGCGCTGCTGCTGTTGGCGCTGACCGTTGGACTCTATCTCGGCGGCCTGCTCACGCTGTGGCTGCTCCGGCAGCCGGCGCCGCTGCATTTCACCACCTATGTCGAATACTGGCAGGCACTCGGCCAGCCGGACTGGCAACCGTTTGCCGGCAAGATCCGGTTGGCCGGTGGTCTCGGTTTCGGTTTGCCGTTGCTGTCGTGGGCGATCGTTGCGGTGTTGATCCTCAAGCCCCGCGCCAGGGCCTTCCATGGCGATGCGCGCTTTGCCAGTCGCGGCGACCTGGCTCGCGCCGGCCTGCTCAAGCCGTCGCCCGAAGGCGTCATCATCGGCAAGGCAGGCGGTGATTACCTTTATCTCGGCGGCACGCGGCACATCGTCATGACGGCGCCGACGCGCACCGGCAAGACCACCTCCATCGCGATTCCGGTGCTGCTGACTTACCGGCATTCCATCGTCTGCATGGATCTCAAGGGCGAGTTGTTCCAGCACACCAGCGGATACCGCGCCGGCATCGGGCAAACCATCTATCGCTTCGCGCCGTATGCCGAGGACGGCCGTACACATCGCTTCAATCCGCTGATGGCGATGTCCTCCGATCCGCGCGTGCGCGTGGGCGAACTGCAGACGCTCGGCGCGATCCTGTATCCGGATGAGCCTGGTCAGGACCCGTTCTGGACGTCGCAATCGCGCACTGCCTTCGTGGCATTTGGCTCGTACCTGTTCGAGGCATGGGACGACAAGGTTCGCCAGAATCTTCACGGTTCCGACGGCCGTTTCCTGCAGGCGCGGCTCAAGGAACCGTTCGTCAGCACGACCACCCGAGCCGCCCTCACCAGCCTGACCGGCATGGCCGAACAGACCTTCGCCTCGGTGATCGCCACCACCCAGGCGCCGCTGCAACAGTTCCTCAGCCCGATCCTGGCCGCAGCCACCAATGCCTGCGATTTCGACGTGGACGTCCTGCGTCGACGCCCCGTTACCATCTATGTGGTGATTCCGCCGCAGAAGCTGGGCGAGGCGCGCCGGCTGCTCAACATCTTTTTCTCCACCGTGATCGGACAGAACCTGCGGCAAACTCCGCAGGATGATCCCGCGCTGAAATACCAGATGCTGCTGCTGATGGACGAGTTCACCGCGATGGGGCGGGTCAATGTGTTGTCCGAGCGGATTTCGCTCACCGCCGGTTACGGCATTCGTGACCTGTCGATCATCCAGAGCCTGTCGCAGCTGGACGCGACCTACGGTGCGGACGAGGCACGCACCTACATCACCAACCACGCCGCCAGCATCGTGTTCACTCCGCGCGAGCAGCGCGATGCCGAGGAGTACTCCAAGATGCTTGGTGACACCACGGTCAAGCGACGCACCCGCAGCACCGGCAAGCAAGGCACCAGCTACAGCCACACGGACGAGCGACGCCCACTGATGCTGCCGCAGGAGTTCATCTTTCTCGAAGGTTGTCGCCCCATCAAGTGCCGCAAGAACTGGTACTTCAAGGATCGACGACTGAAGCAACGTATCGTTCCGCCCGTGGTCGTGCGGCCGATCTCCCCGGCTGGAGAACATCCCATGCCCGGCAAGACCCGGCAGGCCATTGCGGCTGCCGTCAGCTTGGCGTTGGCGGCGTGCGCTTCGCCATCCATTTCCAACGCCGCCGCTGCGGAAAGCAGCGCGGCGGTTCAGGCGGTCCCCGCCATCGGCGTCAAGGCGCAGCACGGGCCAAGTACCCTTTCGAACGGCTGCCGACCTTGA
PROTEIN sequence
Length: 596
MGVLRTRVAGVVALLLLALTVGLYLGGLLTLWLLRQPAPLHFTTYVEYWQALGQPDWQPFAGKIRLAGGLGFGLPLLSWAIVAVLILKPRARAFHGDARFASRGDLARAGLLKPSPEGVIIGKAGGDYLYLGGTRHIVMTAPTRTGKTTSIAIPVLLTYRHSIVCMDLKGELFQHTSGYRAGIGQTIYRFAPYAEDGRTHRFNPLMAMSSDPRVRVGELQTLGAILYPDEPGQDPFWTSQSRTAFVAFGSYLFEAWDDKVRQNLHGSDGRFLQARLKEPFVSTTTRAALTSLTGMAEQTFASVIATTQAPLQQFLSPILAAATNACDFDVDVLRRRPVTIYVVIPPQKLGEARRLLNIFFSTVIGQNLRQTPQDDPALKYQMLLLMDEFTAMGRVNVLSERISLTAGYGIRDLSIIQSLSQLDATYGADEARTYITNHAASIVFTPREQRDAEEYSKMLGDTTVKRRTRSTGKQGTSYSHTDERRPLMLPQEFIFLEGCRPIKCRKNWYFKDRRLKQRIVPPVVVRPISPAGEHPMPGKTRQAIAAAVSLALAACASPSISNAAAAESSAAVQAVPAIGVKAQHGPSTLSNGCRP*