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SCNpilot_cont_500_bf_scaffold_17637_1

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

partial RP 5 / 55 BSCG 13 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: 3..3008

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase-associated protein RapA {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010031}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010033};; ATP-dependent helicase HepA {ECO:0000256|HAMAP-Rule:MF_01821}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.3
  • Coverage: 790.0
  • Bit_score: 1399
  • Evalue 0.0
RNA polymerase-associated protein RapA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM34_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 90.3
  • Coverage: 790.0
  • Bit_score: 1399
  • Evalue 0.0
DNA/RNA helicase, superfamily II, SNF2 family similarity KEGG
DB: KEGG
  • Identity: 89.0
  • Coverage: 790.0
  • Bit_score: 1380
  • Evalue 0.0

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3006
TCGGCGCGCCGGCCGCCGCGCGTGCTGCTGGCCGATGAGGTGGGCCTGGGCAAGACCATCGAGGCGGGCATGATCGTCGCGCGCCAGCTCGCCACCGGCCGCGCCTCGCGCGTGCTGCTGCTGTTGCCCGACACGCTGGTCTACCAGTGGTTCGTCGAGATGCTGCGCCGCTTCAACCTCAGCTTCGCGATCTACGACGAGGAACGCTGCGAGGCCCTGGAGCAATCCGGCGACGCCGGCAACCCGTTCGAGGACGAGCAACTGGTGATCGCCGACTTCGGCTTCCTGGAAAGCTCGCCGAAATACACGCAGCAACTGCTGGACGCGCCGTGGGACCTGCTGGTGGTGGACGAAGCGCATCACCTGGCCTGGTCGCCGGAAGCCGCCAGTCCGCGCTACACGATGGTGGAGCAACTGGCCGCGGCGATCCCCGGCGTCATCCTTCTCACCGCCACCCCGGAACAGCTCGGACGCAGCGGCCACTTCGCCCGCCTGCGCCTGCTCGATCCGCAGCGCTATCACGATCTGGACGGCTATCTGGCCGAGGCCGACACCTATCAGGCGCTATCGAAGATCGCCGACCGCCTGCTCGACGGCCAGCCGTTGGATGCCGGCCAGCACGCCGCGCTCACCGAGGCCTTCCACGGCGATGCGACGCTCACCGCACTGCTGGCCGATTCCACCAGGCCGGCCCATGCGCGCGAACTGCTGGCCGCGCTGATCGACCGCCATGGCACCGGTCGCGTGATGTTCCGCAACAACCGCGCCGGCGTCGGCGGCTTTCCCAAACGCCTGCCCGAATGGCACCTGCTGGACGCCGACACGGTCGACGACAGCACACGGCAGGCGCTGCTGGCCGAGTTCCACGCCGACATCCAGCAGCCGCCGGCGCTGATCGAGGTCGACTACGCCACCGACCCGCGCATCGATACCCTGATCGCCCTGCTGGAGAAACATCCGCAGGACAAGTTCCTGCTGATCTGCCGCAGCCAGGCCAAGGTGCTGGCGCTGGAAGAAGCGCTGCGCACGAAGAGCGGCGTCGGCGTGGCGCGTTTCCACGAAGGTCTCAGCATCGTGCAGCGCGACCGCAACGCCGCCTATTTCGCCCAGCCCGACGGCGCGCGTTTGCTGCTGTGCTCGGAGATCGGTTCGGAAGGCCGCAACTTCCAGTTTGCGCACCGGCTGGTGCTGTGGGATCTGCCGCTGGATCCGGACCTGCTCGAACAGCGCATCGGTCGGCTCGACCGCATCGGCCAGAAGCACGACATCGCCATCCACATCCTCGCCGTGGCCGACAGCGCCCAGCACGTGCTGGCGCGCTGGTACGACGAAGGCGTCGACGCGTTCCGCCTCAGCCCGGCCGACGGCCGCGAACTGCTGCGCCGCTACGGCGAGCCGCTGACCCGCCTGGCGGACGAGCACGCCCGCGGCGACGACAACCGCGATCAGGAACTCGACGCCCTGCTCGCCGAAACCCGCGCCAGCCACGAGCAGATGGCGGCACTCATCCGCGGCGGCCGCGACCACCTGCTGGAACTCGCTTCCAGCCGCGACCCGCACGCCGACGAATTGCAGCAGGCCTTCCGCCGCGACGATCATGATCCGGGCCGCGACGCCTTCGTGCAGCGCCTGCTGGAGGCATTCGGCATCCACGCCGAGGAGCTCGGCGCGCAAGTGCTGCTGCTCGACCCGCAATACCTGTCCACCGACGCCCTGCCCGGCTTCGCCGAGGGCCCGCAGTCGGTCACGTTCTCGCGCGAGGTGGCGCTGTCGCGCGAGGAGCTGCCGCTGCTGCGGCTGGACCTCCCGCTGGTAGCCGGCGCGCTGGATCTGGCGCTGTCCGGCGAACAGGGCAATGCCGCCTTCATGGTCGACGACGTGCTGGCTCCGCGGACCGCACTGCTGCAGGCGGTTTACGTGCTCGAATGCGTGGCCGATCGCCGGCTCGACGCCGAGCGTTTCCTGCCGCCCTCGCCGCTGGTGGTGACCGTGGACACCCGCCTGGTCGAACGCGCCGACTTCACGCCCAGCGACACGGCGCTGCGCAAGGCCAACGACCGCCACATCGAGGTGGCACGCTACCGCAAGTTCCTCGGCAAGCTGGTGCCGCCGATGCTGGAACGCGCCGAAGCGCTGGCCAGTACGCGCGCGCAAGCGCACATCGACGACGCCGTGGCCGCCGCCACCGAATCGCTGGACAACGAACTCTCGCGGCTGCTGGCCCTGCGTACAGTGAACCCATCGATCAGCGACACCGAAATCGCCGCCGTCACCGACGAGCGCCACGCCCTGCTCGGTGCACTGCCGCAAGCGCGGCTGCGACTGGACGCCGTGCGTTTCGTCGTCAGCGCCGACTTCCTCGCCCTGCGCTGCCCCGCCTGCGACGCCGGGCGGGCACCGCCAGCCCGGCGCGTCCGCCTTTGCGATCCCCGATTCCCGGATCTACAGCATCAGCCGCCGCTGCGGCTTGATCGGCAGCTTGCCACGCCAGTACTGGATCAGCACGATGCCGCCGACCATGCCGCCGAGATGGGCGAAATGGGCCACGCCGGCCTGGGTGCCGGTCACGCCCAGCACCAGCTCCACCGCCGCATAGCCGATCACGAAGATCCATGCGGGGATCGGCACCGGCAGGAAGATCAGCATCATCTTCTCGTGCGGGTACAGCATGCCGAAGGCCAGCAACAGGCCGAAAATCGCGCCAGACGCGCCCAGCGTGGGATAGAAGCCATGGGTGAACCAGTGCACCACGATCAGCTGGGCCACCGCCGCCACGACTGCACAGACAAAGTAGTAGATGATGAAATTGCGCGCGCCGAAGGTGCGCTCGATGGTGCCGCCGAACATGAACAGCGCGAACATGTTGAACGCGATGTGGGTCAGGCCGCCGTGCATGAAGGCGTAGGTCACCAGCTGCCACGGGCGAAAGCCGATCGGTCGGCCCCCCACGGCCACAGCGCGAAATACTGCAGGAAGACCTCGCCGAAGAACTGTTGCAGCAGGTAG
PROTEIN sequence
Length: 1002
SARRPPRVLLADEVGLGKTIEAGMIVARQLATGRASRVLLLLPDTLVYQWFVEMLRRFNLSFAIYDEERCEALEQSGDAGNPFEDEQLVIADFGFLESSPKYTQQLLDAPWDLLVVDEAHHLAWSPEAASPRYTMVEQLAAAIPGVILLTATPEQLGRSGHFARLRLLDPQRYHDLDGYLAEADTYQALSKIADRLLDGQPLDAGQHAALTEAFHGDATLTALLADSTRPAHARELLAALIDRHGTGRVMFRNNRAGVGGFPKRLPEWHLLDADTVDDSTRQALLAEFHADIQQPPALIEVDYATDPRIDTLIALLEKHPQDKFLLICRSQAKVLALEEALRTKSGVGVARFHEGLSIVQRDRNAAYFAQPDGARLLLCSEIGSEGRNFQFAHRLVLWDLPLDPDLLEQRIGRLDRIGQKHDIAIHILAVADSAQHVLARWYDEGVDAFRLSPADGRELLRRYGEPLTRLADEHARGDDNRDQELDALLAETRASHEQMAALIRGGRDHLLELASSRDPHADELQQAFRRDDHDPGRDAFVQRLLEAFGIHAEELGAQVLLLDPQYLSTDALPGFAEGPQSVTFSREVALSREELPLLRLDLPLVAGALDLALSGEQGNAAFMVDDVLAPRTALLQAVYVLECVADRRLDAERFLPPSPLVVTVDTRLVERADFTPSDTALRKANDRHIEVARYRKFLGKLVPPMLERAEALASTRAQAHIDDAVAAATESLDNELSRLLALRTVNPSISDTEIAAVTDERHALLGALPQARLRLDAVRFVVSADFLALRCPACDAGRAPPARRVRLCDPRFPDLQHQPPLRLDRQLATPVLDQHDAADHAAEMGEMGHAGLGAGHAQHQLHRRIADHEDPCGDRHRQEDQHHLLVRVQHAEGQQQAENRARRAQRGIEAMGEPVHHDQLGHRRHDCTDKVVDDEIARAEGALDGAAEHEQREHVERDVGQAAVHEGVGHQLPRAKADRSAPHGHSAKYCRKTSPKNCCSR*