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SCNpilot_cont_500_bf_scaffold_42111_3

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

partial RP 5 / 55 BSCG 13 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: comp(1068..1499)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK27_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 81.8
  • Coverage: 143.0
  • Bit_score: 240
  • Evalue 1.40e-60
RNA polymerase sigma factor {ECO:0000313|EMBL:EIL99818.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.8
  • Coverage: 143.0
  • Bit_score: 240
  • Evalue 1.90e-60
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 67.4
  • Coverage: 141.0
  • Bit_score: 190
  • Evalue 3.90e-46

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 432
CTGCGCGATCCCCAGCGCACCGACGAGCTGTTCCAGGAAACCTGGAGCCGGGTGATCGCCGCCCGCGCGCGCTACCAGCCGCAAGCAAAGTTCAGTACCTGGCTGCTGCAGATCGCGCACAACCTTCTGGTCGATGCGCTGCGCCGCCAGCGCCCCACCGCCGACGGCGAGGAAGCCGAACTGGCGCTGTCCCGCGTCGCCATCCCCGAACACGAGCAACCCGAGCACGCCTGGTCCGATTTCGAGCGCCGCCGCCATCTGCAGCGCGCGATCGAGCAGTTGCCCGACGAGCAACGCACCGCCATCCTGTTGCGGCTGGAGCAGGAGCTGAGCCTGGAGGAGATCGCCGAAGTGACCGGCAGCGGCCGCGAGACCGTGAAGTCGCGCCTGCGCTATGCCATGACCCGCCTACGTGAAGCGCTGTCCGAATGA
PROTEIN sequence
Length: 144
LRDPQRTDELFQETWSRVIAARARYQPQAKFSTWLLQIAHNLLVDALRRQRPTADGEEAELALSRVAIPEHEQPEHAWSDFERRRHLQRAIEQLPDEQRTAILLRLEQELSLEEIAEVTGSGRETVKSRLRYAMTRLREALSE*