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SCNpilot_cont_500_bf_scaffold_67015_1

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

partial RP 5 / 55 BSCG 13 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: comp(2..301)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ24_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 94.0
  • Coverage: 100.0
  • Bit_score: 185
  • Evalue 2.80e-44
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.0
  • Coverage: 100.0
  • Bit_score: 185
  • Evalue 3.90e-44
alternative sigma factor RpoH; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 84.0
  • Coverage: 100.0
  • Bit_score: 167
  • Evalue 2.50e-39

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Taxonomy

Rhodanobacter fulvus → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 300
ATGTCCCAAGCCCTGGTGACCGCCAACTTCCCCTTGCCCAGCGTGGTTGGCAGCCTGGATGCCTACATTTCCGCAGTGCATCGCATCCCGGTGCTCAGCGTGGAAGAGGAACAGGCGTTGTCGCGTGATTATCTGCAGCAGGACAACTTGGACGCGGCCAAGAAGCTGGTGATGTCGCACCTGCGTTTCGTGGTGCACGTGGCGCGCGGCTACTCCGGCTACGGCCTGCAGCTTGCCGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTCAAGCGTTTCGACCCGGACATG
PROTEIN sequence
Length: 100
MSQALVTANFPLPSVVGSLDAYISAVHRIPVLSVEEEQALSRDYLQQDNLDAAKKLVMSHLRFVVHVARGYSGYGLQLADLIQEGNIGLMKAVKRFDPDM