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SCNpilot_cont_500_bf_scaffold_10784_6

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: 4684..5361

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNP3_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 43.5
  • Coverage: 191.0
  • Bit_score: 176
  • Evalue 2.20e-41
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 43.5
  • Coverage: 191.0
  • Bit_score: 176
  • Evalue 7.00e-42
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU64143.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.5
  • Coverage: 191.0
  • Bit_score: 176
  • Evalue 3.10e-41

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 678
ATGGTATTGCTTTTTACTCCAAATACTTTATGTCCTTCCTTTTTATTATTTTTATTTTTCAAAACTAACACTGCATTGCCCGGAAAGGATACATACGATGATGCCCTGCTAATTCAGGAATTGCGGCAAAATAATGCTGAAGCATTTATAGAGCTATATAACAGGTATCATGTACAGATGTATAGCTGGCTGATCCGCTTTGTTAAACTTCCCGAGTTTGCTGAAGATATTATCCAGGAAACTTTTTTAAAGATCTGGGAGATCAGGCATCGTCTCAATCCCGCGCAATCTTTTCCTGCCTACCTGTATCGGATAAGCCGTAATAAAGCCTTTAAATCATTGAAGAAAATTTCACTGGATGAAACGCTCAGGAAACAGGTATTGATCCAGTTTGAAATAGAGTCGGATGATCCCGAAAAAAGATTACGATGGTTGCAATACCAGCAGTTGCTCGAAAATGCAGTCAACCGGCTGCCCGCACAACGGCAAAAAGTATTCAAGCTGTGCAGGCAAAACAATAAGACCTACGACGAAGTGGCAAATGAGCTGGGCATTTCCCGTAATACCGTAAAAGAGCACATGGTCAAAGCCATGCAGGACATCCGGCAATACTTCTACCGGTATGGCGAGATCAGCCTCATCCTGTTGTTTTGCAGCCCGGTGCTGATATTGTATTGA
PROTEIN sequence
Length: 226
MVLLFTPNTLCPSFLLFLFFKTNTALPGKDTYDDALLIQELRQNNAEAFIELYNRYHVQMYSWLIRFVKLPEFAEDIIQETFLKIWEIRHRLNPAQSFPAYLYRISRNKAFKSLKKISLDETLRKQVLIQFEIESDDPEKRLRWLQYQQLLENAVNRLPAQRQKVFKLCRQNNKTYDEVANELGISRNTVKEHMVKAMQDIRQYFYRYGEISLILLFCSPVLILY*