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SCNpilot_cont_500_bf_scaffold_25057_2

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: comp(606..1187)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma subunit, ECF family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE18_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 78.8
  • Coverage: 193.0
  • Bit_score: 313
  • Evalue 1.30e-82
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO44916.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.3
  • Coverage: 193.0
  • Bit_score: 321
  • Evalue 1.20e-84
RNA polymerase, sigma subunit, ECF family; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 78.8
  • Coverage: 193.0
  • Bit_score: 313
  • Evalue 4.10e-83

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Taxonomy

Flavihumibacter petaseus → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 582
ATGAATTCCCTAACCAACCTGCCTGATCAGCAACTGATCAACCTCTTCATGAGCGGAGATGCGTCTGCGCTCGAAACACTTATCGTTCGTCACAAAGACAAGATTTACACTTCCATCTTCCTGCTTGTCAAAGACAAGTATCTGGCGGAAGACATCTTCCAGGATGTTTTCATCAGGGTAATTGACACTGTCCGCAGTGGCCGTTATACGGAAGAAGGTAAATTCCTGCCCTGGGCTATGAGGATCGCCCATAATCTTTGTGTGGATCACTTCCGCAAAGTAAAGCGCACACCTACCATCAAAACCGGTGATGACCGCGACATCTTTGAAGTGATCAATTTTTCAGAAGACGGGGTTGATCGCCGTATGATGCAACGTCAGAGCCATGATCGTGTTCGCGAAATGCTTGATCGCCTTCCTGAAGATCAGCGCGAAGTGATCATTCTCAGGCATTATGCAGAATTAAGTTTCAAAGAAATCGCTACCATGACAGACTGCAGCATCAACACTGCGCTCGGTCGTATGCGGTATGGTTTAATCAACCTGCGCAAAATGATGCAGGAAAAACAAATTGCACTGTAA
PROTEIN sequence
Length: 194
MNSLTNLPDQQLINLFMSGDASALETLIVRHKDKIYTSIFLLVKDKYLAEDIFQDVFIRVIDTVRSGRYTEEGKFLPWAMRIAHNLCVDHFRKVKRTPTIKTGDDRDIFEVINFSEDGVDRRMMQRQSHDRVREMLDRLPEDQREVIILRHYAELSFKEIATMTDCSINTALGRMRYGLINLRKMMQEKQIAL*