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SCNpilot_cont_500_bf_scaffold_37548_1

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: comp(2..388)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NM26_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 70.8
  • Coverage: 130.0
  • Bit_score: 187
  • Evalue 9.40e-45
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KGO09917.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.3
  • Coverage: 129.0
  • Bit_score: 198
  • Evalue 4.40e-48
rpoE; DNA-directed RNA polymerase specialized sigma subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 33.6
  • Coverage: 128.0
  • Bit_score: 75
  • Evalue 1.30e-11

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Taxonomy

Elizabethkingia miricola → Elizabethkingia → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 387
ATGGTTCAGTTTGAAAAGTATACCGAATCAGAGAGCATACAACGCAGTGCAGGCGGGGAAAAATCGCTTTATGAAATTATTGTCAGGCGGTTACATGCTTACCTGTACAAAGTGGGAAGGTCGTATAATTATAGCCATGAAGACACGCAGGATTTAATGCAGGAAACCTTCATTGATGCCTATAAAAATTTATCTGCATTTGAAGGGCGTTCCGGCTTTGGCACCTGGATCATCCGCATCATGCTGAACAACTGTTACAGGAAAAAACAGAAAGCAGGCTTTAAAAACGAGATAATGCAGGATGTAAGCGAAAATTCAAAACCAATGTTTACCCGGTCGAATAATGATACGGACAAAATGGTTCAAAGCCGGGAGCTGGGACATATT
PROTEIN sequence
Length: 129
MVQFEKYTESESIQRSAGGEKSLYEIIVRRLHAYLYKVGRSYNYSHEDTQDLMQETFIDAYKNLSAFEGRSGFGTWIIRIMLNNCYRKKQKAGFKNEIMQDVSENSKPMFTRSNNDTDKMVQSRELGHI