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SCNpilot_cont_500_bf_scaffold_54656_1

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: 2..343

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH42_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 47.5
  • Coverage: 99.0
  • Bit_score: 98
  • Evalue 3.90e-18
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EDM35123.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.5
  • Coverage: 99.0
  • Bit_score: 98
  • Evalue 5.50e-18
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 41.6
  • Coverage: 113.0
  • Bit_score: 91
  • Evalue 2.60e-16

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Taxonomy

Pedobacter sp. BAL39 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 342
ATAGCTATACGGTACATTGAAAAGAATATCACCCGTGATCATTATTTACAAACATTATCTGATAATATAGTTGCGAATGAAGCTGATCCTGCCGGGTATTGCGAATACAGGGAATTACAGCATAAATTAAAGCAGGCTGTTGCAAGCCTGCCTCTTAAAATGCAGGAGGTATATCTTTTAAGCCGCAACGAGAAAATGTCTTATAAAGAGATCGCAGACCGCCTGGGTATTGCGGAAAATACAGTGAGAAAACAATTAAGCAATGCGCTTAAATTGCTTCGGACTTCAGTAAGCGAGCTTACAATATCGATGCTTGTATGCCTGGCAACAAGATTTTTTTGA
PROTEIN sequence
Length: 114
IAIRYIEKNITRDHYLQTLSDNIVANEADPAGYCEYRELQHKLKQAVASLPLKMQEVYLLSRNEKMSYKEIADRLGIAENTVRKQLSNALKLLRTSVSELTISMLVCLATRFF*