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SCNpilot_cont_500_bf_scaffold_22987_4

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_66_14

partial RP 27 / 55 BSCG 28 / 51 MC: 3 ASCG 10 / 38
Location: comp(3264..3773)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-24 subunit of RNA polymerase, ECF subfamily n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AH49_RHIFH similarity UNIREF
DB: UNIREF100
  • Identity: 60.6
  • Coverage: 160.0
  • Bit_score: 188
  • Evalue 5.60e-45
RNA polymerase sigma70 factor {ECO:0000313|EMBL:KKB13247.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.0
  • Coverage: 168.0
  • Bit_score: 240
  • Evalue 1.30e-60
rpoE; sigma-24 subunit of RNA polymerase, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 60.6
  • Coverage: 160.0
  • Bit_score: 188
  • Evalue 1.80e-45

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Taxonomy

Devosia geojensis → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 510
CCAATGACCACTGCCATCGGACCATTGCTGATCGACGCGCTGCCGCGGCTCCGCCGCTACGCCCTCTCGCTGGCGCGAGCCGCCGACGTCGCCGACGACCTGGTGCAGGCGGCTTGTGAGCGCGCCCTCGCCACCGCCGCGACGCTCGACGATCGGCAACGCTTCGACGCCTGGATGTTCCGGATCGTCCGCAACCTCTGGTACGACCGGCTGAGACGGCTCAGAACGCGTGGCGAAGAGTTCGATGTCACGGTCCGCGACGACCTCGTCGCCATCGAGGGCGAGAAGCTGCCGGAGCGTCGGCTGCTGCTCGGCCAGGCCGCCGCGGCGATCGACCGACTGCCGGACGACCAGCGCGAACTGCTGCTGCTGGTCTGTGTCGAGGAGCTGAGCTACCGCGACGCCGCCGAAGTGCTGCAGTTGCCGATCGGCACGGTGATGAGCCGGCTGGCGCGCGCCCGCCGGCGCGTCGCCGAGGATCTCGGCGTCGAGTCCGGGCGAGTGCTGTGA
PROTEIN sequence
Length: 170
PMTTAIGPLLIDALPRLRRYALSLARAADVADDLVQAACERALATAATLDDRQRFDAWMFRIVRNLWYDRLRRLRTRGEEFDVTVRDDLVAIEGEKLPERRLLLGQAAAAIDRLPDDQRELLLLVCVEELSYRDAAEVLQLPIGTVMSRLARARRRVAEDLGVESGRVL*