ggKbase home page

SCNpilot_cont_500_bf_scaffold_39937_2

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_66_14

partial RP 27 / 55 BSCG 28 / 51 MC: 3 ASCG 10 / 38
Location: comp(187..738)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R827_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 60.4
  • Coverage: 182.0
  • Bit_score: 223
  • Evalue 2.20e-55
RNA polymerase sigma factor {ECO:0000313|EMBL:KKB85022.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.1
  • Coverage: 179.0
  • Bit_score: 235
  • Evalue 6.00e-59
RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 60.4
  • Coverage: 182.0
  • Bit_score: 223
  • Evalue 7.00e-56

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Devosia limi → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 552
GTGAGCGACATCCGACAGGCCATCACCCCGGAAACCCTGCTGGCGCGCGTCGCCAAGGCGGAGCGTGCGGCGCTGGCGGCGTTGTTCGAGAGCGAGGCGGGACGGCTGCTCGCAGTGGCGCGGCGAATCGTCAGGCGGAGCGACCTTGCCGAGGAAGTGGTACAGGAGACGTTTGTTGCGGTTTGGCAGCGGGCCGGGCAGTTCGACCCGGCGCGAGGCAGCGCACGCGGCTGGCTGACGACGATGGTGCGCAACCGGGCGCTGAACCTGCTGCGCGACGGCGGGCGACTGGAATTCCATGACGCAACGACGCTGGAAGCGATGAGCGCCCGCGAGCACGACGCGGTTTCGGCGTTCCAGACGCTGCCGGACAGTGAAGGGCTGAAGCATTGCCTCGAGCAGCTGGATGAGCCGAAAAGGCGCGCCGTGCTGCTGACTTACGTTGTCGGGATGAGCAATGGCGAGGTGGCGGAACGGCTGGCCGTGCCGTTGGGCACTGCCAAATCGTGGATACGACGCTCCATCGCAGCGCTGCAGGAGTGCCTGAGATGA
PROTEIN sequence
Length: 184
VSDIRQAITPETLLARVAKAERAALAALFESEAGRLLAVARRIVRRSDLAEEVVQETFVAVWQRAGQFDPARGSARGWLTTMVRNRALNLLRDGGRLEFHDATTLEAMSAREHDAVSAFQTLPDSEGLKHCLEQLDEPKRRAVLLTYVVGMSNGEVAERLAVPLGTAKSWIRRSIAALQECLR*