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SCNpilot_cont_750_bf_scaffold_17952_1

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

partial RP 5 / 55 BSCG 11 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: comp(2..349)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VRG2_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 90.5
  • Coverage: 116.0
  • Bit_score: 212
  • Evalue 1.90e-52
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.5
  • Coverage: 116.0
  • Bit_score: 212
  • Evalue 2.60e-52
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 88.8
  • Coverage: 116.0
  • Bit_score: 208
  • Evalue 8.60e-52

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 348
ATGCAAGGCCATGCCCATGTTGCATCCGTCGACTACACCGCGCTGGACGACCACGCGCTGGTGGCGCTTGTTCGCAGCGGCGAGCGCGAGGCGTTCCGCCACATCATGCAACGCTGCAACCAGCGCCTGTTCCGTGTCGCGCGCGCCGTGATCGGCGAGGACTCCGAGGCGGAAGACGTGTTGCAGGAGTCGTATATGCGTGCCTATGACAAGCTGGATTCATTCCGCGGCGATTCGACCCTGTCGACCTGGCTGACCACGATCGTGCTGAACGAGGCCCGTGGCCGCCTGCGCAAGCGCCACACCATGGTCGGGCTGGAACAGGTGGACGCCGCACCCGACGACACG
PROTEIN sequence
Length: 116
MQGHAHVASVDYTALDDHALVALVRSGEREAFRHIMQRCNQRLFRVARAVIGEDSEAEDVLQESYMRAYDKLDSFRGDSTLSTWLTTIVLNEARGRLRKRHTMVGLEQVDAAPDDT