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SCNpilot_cont_750_bf_scaffold_32737_2

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_61_16

partial RP 3 / 55 BSCG 4 / 51 MC: 1 ASCG 0 / 38
Location: comp(510..1058)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6V849_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 53.5
  • Coverage: 172.0
  • Bit_score: 188
  • Evalue 6.00e-45
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EFI51409.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.5
  • Coverage: 172.0
  • Bit_score: 188
  • Evalue 8.40e-45
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 52.2
  • Coverage: 182.0
  • Bit_score: 174
  • Evalue 3.70e-41

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Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 549
GTGCAGGAAGTCGAAGGGCGACTGAAGACACTGATGGTTCAGAGTCTGGCAGGAGATGAGCGGGCGTATCGAGCGCTGTTGGACGACGTCGCCCGACAATTGCGGAGCTACTACGGACGCCGGCTACGTGAGCGCGCGGCGATCGACGATCTTGTTCAGGAGACATTGATCGCTGTTCACACCCGTCGTTCGACCTATGACAGCGGGCGTCCCTTCACCGCATGGCTCTATGCGATCGCCCGGTACAAATTGATCGACTACATGCGCGCCAACAAGCTGCGGGAGACGATGACGTTGGACGATGCACCCGAGGCGCAGCTCGCATCGTCGGGAGTCGAGAGCGAGTTTGCGCATCAGGATTTGGATACGGTTCTGGAGACGGTGTCGCCGTTGCAGAAGAGCCTCATCAAGGCTGTCAAAGTCGAAGGACGATCGATCGCCGAGGTCGCGTCTTCCTCCGGCCTCAGTCCGTCGGCCGTGAAGGTGACAGTCCACCGCGCCTTAAAGAAATTAAGCCAGCGTTTCGGCAGAGGTCAGACACATGATTGA
PROTEIN sequence
Length: 183
VQEVEGRLKTLMVQSLAGDERAYRALLDDVARQLRSYYGRRLRERAAIDDLVQETLIAVHTRRSTYDSGRPFTAWLYAIARYKLIDYMRANKLRETMTLDDAPEAQLASSGVESEFAHQDLDTVLETVSPLQKSLIKAVKVEGRSIAEVASSSGLSPSAVKVTVHRALKKLSQRFGRGQTHD*